View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_high_19 (Length: 247)
Name: NF4246_high_19
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 45882652 - 45882732
Alignment:
| Q |
79 |
caagcaacgtagtactctttttctcgaattgaagggagataagccacaacaaattttcctacaagcaacatcagctatcaa |
159 |
Q |
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| T |
45882652 |
caagcaatgtaatattctttttctcgacatgaagggacataagccacaacaaattttcctacaagcatcatcaactatcaa |
45882732 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 45863252 - 45863315
Alignment:
| Q |
78 |
acaagcaacgtagtactctttttctcgaattgaagggagataagccacaacaaattttcctaca |
141 |
Q |
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| T |
45863252 |
acaagcaatgtaatattatttttctcgaattaaagggagataagccacaacacatttccctaca |
45863315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 24349322 - 24349270
Alignment:
| Q |
94 |
tctttttctcgaattgaagggagataagccacaacaaattttcctacaagcaa |
146 |
Q |
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| T |
24349322 |
tctttttcttgacatgtagggagataagccacaacaaattttcctacaagcaa |
24349270 |
T |
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