View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4246_high_2 (Length: 803)

Name: NF4246_high_2
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4246_high_2
NF4246_high_2
[»] chr1 (1 HSPs)
chr1 (18-795)||(5754541-5755305)


Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 795
Target Start/End: Complemental strand, 5755305 - 5754541
Alignment:
Q  18 caagaaggttagaaatagaaaaacaggacaaaaagagtgacgttgggtttatggaagcgggattaacgttttaaattggtattctctctctctaccactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5755305 caagaaggttagaaatagaaaaacaggacaaaaagagtgacgttgggtttatggaagcgggattaacgttttaaattggtattctctctctctaccactt 5755206  T
Q  118 tcttaaaccttcttaaatcctgtcttgccacaaagtaaaactagaattagagtagtaacataagtactgttgtgacatgctttaaaatctcacattgaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5755205 tcttaaaccttcttaaatcctgtcttgccacaaagtaaaactagaattagagtagtaacataagtagtgttgtgacatgctttaaaatctcacattgaaa 5755106  T
Q  218 gcgcatatatgaagc-atgcgctttcgtcatggcctggtgcatgaggcgcatcaggcccacaagtcattgtagggtttgggtttttccctgtcattttag 316  Q
    |||||| |||| ||| ||||||||||||||||||  ||||||||||| |||||||||  |||| | |||||||||||||||||||||| |||||||||||    
T  5755105 gcgcatgtatggagccatgcgctttcgtcatggctaggtgcatgaggtgcatcaggct-acaaattattgtagggtttgggtttttccatgtcattttag 5755007  T
Q  317 tgtgt--ttaatgtttaaaggtcaagaaaatatannnnnnnnnnnnnngtgtaatcttataaaaccaatatgaaatgactctaatgaattgtagaggtta 414  Q
    |||||  ||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5755006 tgtgtgtttaatgtttaaaggtcaagaaaatatttttttttcttttttgtgtaatcttataaaaccaatatgaaatgactctaatgaattgtagaggtta 5754907  T
Q  415 agagttgagagtgagattgttgggttgaaaaatattgtaaatatttaggatgagtgaaaatctttaagtcttgttcattcatataaagagattggaaaat 514  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||    |||||||| |||||||||||      
T  5754906 agagttgagagtaagattattgggttgaaaaatattgtaaatatctaagatgagtgaaaatctttaagtcttgt----tcatataatgagattggaaa-- 5754813  T
Q  515 atataggtagaaatttagtagtttttgaagaagttagttgatgataatttcttgtacatatatctcttgtatcttttgtaagaaataacttattgatagt 614  Q
      ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  5754812 --ataggtagaaatttagtagtttttgaagaagttagttgaagataatttcttgtacatatatctcttgtatcttttgtaaga---aacttattgatagt 5754718  T
Q  615 gtatgatccaccctgaataccacatacaaattgaatataaatacgatcattttttatgaccatagtatttctctaacaacaacacaaatcacattataat 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  5754717 gtatgatccaccctgaataccacatacaaattgaatataaatacgatcattttttatgaccatagtatttctc-aacaacaacacaaatcacattata-- 5754621  T
Q  715 tattatatcaaaaaacaatataaataatattttattcaagatgtctccatatccgtcctaataccccatgatattttcttc 795  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5754620 -attatatcaaaaaacaatataaataatattttattcaagatgtttccatatccgtcctaataccccatgatattttcttc 5754541  T

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