View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4246_high_20 (Length: 241)

Name: NF4246_high_20
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4246_high_20
NF4246_high_20
[»] chr7 (5 HSPs)
chr7 (146-224)||(2580892-2580970)
chr7 (146-222)||(9184667-9184743)
chr7 (146-208)||(9189501-9189563)
chr7 (150-220)||(20284614-20284684)
chr7 (150-220)||(23402513-23402583)
[»] chr8 (1 HSPs)
chr8 (146-224)||(19751890-19751968)
[»] chr6 (1 HSPs)
chr6 (146-224)||(31937099-31937177)
[»] chr3 (5 HSPs)
chr3 (150-220)||(3327848-3327918)
chr3 (146-221)||(6794222-6794297)
chr3 (150-221)||(37466820-37466891)
chr3 (150-220)||(3323180-3323250)
chr3 (183-225)||(46859892-46859934)
[»] chr1 (5 HSPs)
chr1 (146-224)||(32889961-32890039)
chr1 (150-220)||(47102339-47102409)
chr1 (150-220)||(27103902-27103972)
chr1 (150-220)||(47098326-47098395)
chr1 (183-220)||(9476789-9476826)
[»] chr5 (3 HSPs)
chr5 (146-224)||(31300092-31300170)
chr5 (150-220)||(24553027-24553097)
chr5 (150-220)||(17003459-17003529)
[»] chr2 (1 HSPs)
chr2 (150-220)||(10444968-10445038)
[»] chr4 (2 HSPs)
chr4 (150-218)||(42599114-42599182)
chr4 (183-225)||(12072813-12072855)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 2580970 - 2580892
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttgct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||    
T  2580970 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgggagccgtggcgcgattctgct 2580892  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 9184667 - 9184743
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttg 222  Q
    ||||||||||||||||||||  |||||||||||  |||||||||||||||||||||| ||||| | | |||||||||    
T  9184667 ttgtaattgacttcaaatttttgattctgtaaaagccaaaatcgtggcgcgattttgggagccgtcatgcgattttg 9184743  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 9189501 - 9189563
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagcc 208  Q
    ||||||||||||||||||||  |||||||||||| ||||||||| |||||||||||| |||||    
T  9189501 ttgtaattgacttcaaatttctgattctgtaaaggccaaaatcggggcgcgattttgggagcc 9189563  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 20284684 - 20284614
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||| ||||||  |||||||||||| ||||||||||||||| |||||| ||||| |||| ||||||    
T  20284684 aattgactttaaatttctgattctgtaaaggccaaaatcgtggcgccattttgggagccgtgacacgattt 20284614  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 23402513 - 23402583
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||  |||||| ||||| ||||||||||||||||||||||  || | |||||||||||    
T  23402513 aattgacttcaaatttctgattctataaaggccaaaatcgtggcgcgattttggaagtcgtgacgcgattt 23402583  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 19751890 - 19751968
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttgct 224  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||    
T  19751890 ttgtaattgacttcaaatttctgattctgtaaaggccaaaatcgtggcacgattttgggagccgtgacgcgattttgct 19751968  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 31937177 - 31937099
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttgct 224  Q
    |||||||||||||||||||   |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  31937177 ttgtaattgacttcaaattactgattctgtaaaggccaaaatcgtggcgcgattttgggagccgtgacgcgattttgct 31937099  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 3327848 - 3327918
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  3327848 aattgacttcaaatttctgattctgcaaaggccaaaatcgtggcgcgattttgagagccgtgacgcgattt 3327918  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 6794222 - 6794297
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgatttt 221  Q
    ||||||||||||| |||||   ||||||| ||| ||||||||| ||||||||||||| ||||| ||||||||||||    
T  6794222 ttgtaattgactttaaattagtgattctgcaaaaaccaaaatcatggcgcgattttgggagccgtgacgcgatttt 6794297  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 37466891 - 37466820
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgatttt 221  Q
    ||||||||||||||||  |||| |||||||  ||||||||||||||| ||||| ||||| ||||||||||||    
T  37466891 aattgacttcaaatttctgattttgtaaaggtcaaaatcgtggcgcggttttgggagccgtgacgcgatttt 37466820  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 3323180 - 3323250
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||  ||||||| |||| |||||||| || |||||||||| || || |||||||||||    
T  3323180 aattgacttcaaatttctgattctgcaaaggccaaaatcatgacgcgattttgggatccgtgacgcgattt 3323250  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 46859892 - 46859934
Alignment:
Q  183 aaaatcgtggcgcgattttgagagccatgacgcgattttgctg 225  Q
    ||||||||||||||||||| |||| |||| |||||||||||||    
T  46859892 aaaatcgtggcgcgattttcagaggcatggcgcgattttgctg 46859934  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 32890039 - 32889961
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttgct 224  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| |||| ||||| ||||    
T  32890039 ttgtaattgacttcaaatttatgattatgtaaagaccaaaatcgtggcacgattttgggagccgtgacacgattctgct 32889961  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 47102339 - 47102409
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||  |||||||||||| ||||||||||||| |||||||| ||||| |||||||||||    
T  47102339 aattgacttcaaatttctgattctgtaaaggccaaaatcgtggcacgattttgggagccgtgacgcgattt 47102409  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 27103902 - 27103972
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||| ||||||  ||||||| |||| | |||||||||||||||||||| || || |||||||||||    
T  27103902 aattgactttaaatttctgattctgcaaaggcaaaaatcgtggcgcgattttgggacccgtgacgcgattt 27103972  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 47098326 - 47098395
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||| ||||||  |||| ||||||| ||||| |||||||||||||||| ||||| |||||||||||    
T  47098326 aattgacttgaaatttctgattttgtaaaggccaaa-tcgtggcgcgattttgggagccgtgacgcgattt 47098395  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9476826 - 9476789
Alignment:
Q  183 aaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  9476826 aaaatcgtggcgcgattttgggagccgtgacgcgattt 9476789  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 31300092 - 31300170
Alignment:
Q  146 ttgtaattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattttgct 224  Q
    |||||||||||||||||||   ||||||| |||| ||||||||||||||||||||||  |||| |||||||||||||||    
T  31300092 ttgtaattgacttcaaattaccgattctgcaaaggccaaaatcgtggcgcgattttggaagccgtgacgcgattttgct 31300170  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 24553027 - 24553097
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    |||||||||||||||| ||||| ||||||| |||||| ||||||||||||||| ||||| ||| |||||||    
T  24553027 aattgacttcaaatttcagattttgtaaaggccaaaaccgtggcgcgattttgggagccgtgatgcgattt 24553097  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 17003459 - 17003529
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||  |||||||||||| |||||||| |||| | |||||| ||||| |||||||||||    
T  17003459 aattgacttcaaatttctgattctgtaaaggccaaaatcctggcccaattttgggagccgtgacgcgattt 17003529  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 10444968 - 10445038
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgattt 220  Q
    ||||||||||||||||   |||||| |||| ||||||||||||||||||||||| |||| |||||||||||    
T  10444968 aattgacttcaaatttctcattctgcaaaggccaaaatcgtggcgcgattttgaaagccgtgacgcgattt 10445038  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 42599114 - 42599182
Alignment:
Q  150 aattgacttcaaatttaagattctgtaaagaccaaaatcgtggcgcgattttgagagccatgacgcgat 218  Q
    ||||||||||||||||  ||||||||||||  ||||||||||||| ||||||| ||||  |||||||||    
T  42599114 aattgacttcaaatttctgattctgtaaaggtcaaaatcgtggcgtgattttgggagctgtgacgcgat 42599182  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 12072813 - 12072855
Alignment:
Q  183 aaaatcgtggcgcgattttgagagccatgacgcgattttgctg 225  Q
    ||||||||||||||||||| |||| |||| |||||||||||||    
T  12072813 aaaatcgtggcgcgattttcagaggcatggcgcgattttgctg 12072855  T

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