View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_high_4 (Length: 569)
Name: NF4246_high_4
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Original strand, 31391008 - 31391547
Alignment:
| Q |
17 |
acaatgactctctaaaccgaaaaaatgttcgaggaaatcagaaaagggtgcatcaaccctttgaatcaagcagcagtactatatacttttgaattgaagg |
116 |
Q |
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| T |
31391008 |
acaatgactctctaaaccgaaaaaatgttcgaggaaatcagaaaagggtgcatcgaccctttgaatcaagcagcagtactatatacttttgaattgaagg |
31391107 |
T |
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| Q |
117 |
ataaagagacttttacttgctcaatttagagagaaacttatcatagacaagtattacccaacctttatcatatgacaaaattatccaattcatatttcag |
216 |
Q |
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| T |
31391108 |
ataaagagatttttacatgctcaatttagagagaaacttatcatagacaagtattacccaacctttatcatatgacaaaattatccaattcatatttcag |
31391207 |
T |
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| Q |
217 |
gaaaatggcagcatgtcaaagaaacttatgaaattggtgaagggaaactattctccccaggaaatttgagagccacatttgacaacaaagattatgctaa |
316 |
Q |
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| T |
31391208 |
gaaaatggcagcatgtcaaagaaactcatgaaattggtgaagggaaactattctccccaggaaatttgagagccacatttgacaacaaagattatgctaa |
31391307 |
T |
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| Q |
317 |
ggtctacatttatcttatatgagaaaaatatattgttgtttgtattattaacattatcaatggatactaacttcttcgtttttcatcgattagttggtcg |
416 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31391308 |
ggtctacatttatcttatatgagaaaaatacattgttgtttgtattattaacattatcaatggatactaacttcttcgtttttcatcgattagttggtcg |
31391407 |
T |
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| Q |
417 |
attactatgttagagaaaaatacacattgagatacactggaggaatggtgccagatgttaaccaggttcttttctcaacacattcatatatgacattata |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31391408 |
attactatgttagagaaaaatacacattgagatacactggaggaatggtgccagatgttaaccaggttcttttctcaacacattcatatatgacattata |
31391507 |
T |
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| Q |
517 |
agtttataacaagtccttgatacaaaattacttcactaaga |
557 |
Q |
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| T |
31391508 |
a-tttataacaagtccttgatacaaaattacttcactaaga |
31391547 |
T |
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