View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4246_high_5 (Length: 403)

Name: NF4246_high_5
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4246_high_5
NF4246_high_5
[»] chr8 (4 HSPs)
chr8 (12-403)||(17752195-17752586)
chr8 (12-403)||(17761182-17761573)
chr8 (95-400)||(17738112-17738424)
chr8 (292-392)||(15734657-15734761)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 17752586 - 17752195
Alignment:
Q  12 atgaaataggcaaataataaaaagcataaatgtaaatgttacggttagcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg 111  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17752586 atgaaataggcaaatgataaaaagcataaatgtaaatgttacagtttgcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg 17752487  T
Q  112 gacaatttcaggaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaatgcattataaccacttgcatgtttacaacctaa 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17752486 gacaatttcaagaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaatgcattataaccacttgcatgtttacaacctaa 17752387  T
Q  212 tgaattttgaaaataccaaagttggattaccgtaaaacgaggaagaaatctcttgagttaattactattgacagaaccgatatctttttactttccatac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  17752386 tgaattttgaaaataccaaagttggattaccgtaaaacgaggaacaaatctcttgagttaattatcattgacagaaccaatatctttttactttccatac 17752287  T
Q  312 aatcatatcaatagcaatatatagcatttgacatcatatactcattgcattacaatagaattggactagaaaacaggataaaggtataatct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  17752286 aatcatatcaatagcaatatatagcatttgacatcatatactcattgcattacgataaaattggaccagaaaacaggataaaggtataatct 17752195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 17761573 - 17761182
Alignment:
Q  12 atgaaataggcaaataataaaaagcataaatgtaaatgttacggttagcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg 111  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17761573 atgaaataggcaaatgataaaaagcataaatgtaaatgttacagtttgcacacaattgaagtccacacacattcaccctcattaaaagattagaagaatg 17761474  T
Q  112 gacaatttcaggaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaatgcattataaccacttgcatgtttacaacctaa 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17761473 gacaatttcaagaatgaactcacttataaatctatatcatcattaatggtatcacagaacagtgtaatgcattataaccacttgcatgtttacaacctaa 17761374  T
Q  212 tgaattttgaaaataccaaagttggattaccgtaaaacgaggaagaaatctcttgagttaattactattgacagaaccgatatctttttactttccatac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  17761373 tgaattttgaaaataccaaagttggattaccgtaaaacgaggaacaaatctcttgagttaattatcattgacagaaccaatatctttttactttccatac 17761274  T
Q  312 aatcatatcaatagcaatatatagcatttgacatcatatactcattgcattacaatagaattggactagaaaacaggataaaggtataatct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  17761273 aatcatatcaatagcaatatatagcatttgacatcatatactcattgcattacgataaaattggaccagaaaacaggataaaggtataatct 17761182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 95 - 400
Target Start/End: Complemental strand, 17738424 - 17738112
Alignment:
Q  95 aaaagattagaagaatggacaatttcaggaatgaact--cacttataaatctatatcatcattaatggtatcacagaacagtgtaatgcattataaccac 192  Q
    ||||||||||||||||||||| ||||| | ||||| |  ||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  17738424 aaaagattagaagaatggacagtttcaagtatgaatttacacttctaaatctgtaccatcattaatggtatcacagaacagtctaatgcattataaccac 17738325  T
Q  193 ttgcatgtttacaacctaatgaattt-tgaaaataccaaagttggattaccgtaaaacgaggaagaaatctcttgagttaattactattgacagaaccga 291  Q
    ||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| ||||| |||||| |    
T  17738324 ttgaatgtttacaacctaatgattttatgaaaataccaaagttggatcaccgtaaaacgaggaacaaatctcttcaattaattaccattgagagaaccaa 17738225  T
Q  292 tatctttttactttccatacaatcatat------caatagcaatatatagcatttgacatcatatactcattgcattacaatagaattggactagaaaac 385  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||||    
T  17738224 tatctttttactttccatacaatcatatcgatgacaatagcaatatatagcatttgagatc--atactcatggcattacaatagaattggaccagaaaac 17738127  T
Q  386 aggataaaggtataa 400  Q
    |||||||| ||||||    
T  17738126 aggataaacgtataa 17738112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 15734761 - 15734657
Alignment:
Q  292 tatctttttactttccatacaatcatatcaatagcaata------tatagcatttgacatcatatactcattgcattacaatagaattggactagaaaac 385  Q
    |||||||||||||||||||| ||||||||||||||||||      |||||||||||||||||||  |||||| ||||||||||||||||||| |||||||    
T  15734761 tatctttttactttccatactatcatatcaatagcaatagcaatatatagcatttgacatcata--ctcattacattacaatagaattggaccagaaaac 15734664  T
Q  386 aggataa 392  Q
    |||||||    
T  15734663 aggataa 15734657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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