View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4246_high_7 (Length: 397)
Name: NF4246_high_7
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 15630637 - 15630524
Alignment:
| Q |
4 |
gctgtatcttcttctttgggctttaccaaatttcctcgcttatctgttttcataaatctcaattttttcgccaattcttcttatatatgta-----tttc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15630637 |
gctgtatcttcttctttgggctttaccaaatttcctcgcttatctgttttcataaatctcaattttttcgccaattcttcttatatatgtatgtattttc |
15630538 |
T |
|
| Q |
99 |
gtttttgcattgat |
112 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15630537 |
gtttttgcattgat |
15630524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 15630110 - 15630043
Alignment:
| Q |
314 |
tttagaaagaaagaaaaagtcatttaatgggcttgtcccatgattggttaagaaagggattaaaatcc |
381 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15630110 |
tttagaaagaaagaaaaagacatttaatgggcttgtcccatgattggttaagaaaggtcttaaaatcc |
15630043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 28109229 - 28109265
Alignment:
| Q |
229 |
tgtatttgaatttctttgttgttgtaatcaaacacaa |
265 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
28109229 |
tgtatttgagtttcttagttgttgtaatcaaacacaa |
28109265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University