View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4246_high_9 (Length: 385)
Name: NF4246_high_9
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 55307019 - 55306653
Alignment:
| Q |
6 |
aaaaacaattgaattcacctagatcccaaaaatgataactaaattgttgaatgactagaaatttaccccaaattgaataagtggagaatctggaattcga |
105 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
55307019 |
aaaaataattaaattcacctagatcccaaaaatgataactaaattgttgaatgactagaaattcaccccaaattgaataagtggagaatctgagattcga |
55306920 |
T |
|
| Q |
106 |
aacccaactcatggggattcaatgagtaagattttaactaatacattttgtggaaattcagttaataatattaaaccatatttaaatgcaaaagaaaaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55306919 |
aacccaactcatggggattcaatgagtaagattttaactaatacattttgtggaaattcagttaataatattaaaccatatttaaatgcaaaagaaaaga |
55306820 |
T |
|
| Q |
206 |
ctaaacaataatatgatattgattctcaactacaagcattgttgatgtcatttgtaagacaaactattgtgaatactaaaaaggattaaatactaaaata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55306819 |
ctaaacaataatatgatattgattctcaactacaagcattgttgatgtcatttgttagacaaactattgtgaatactaaaaaggattaaatactaaaata |
55306720 |
T |
|
| Q |
306 |
ggaggtattttaattaccttcaacttttaagtagttcattgcattcttttttgttagtttattgttc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55306719 |
ggaggtattttaattaccttcaacttttaagtagttcattgcattcttttttgttagtttattgttc |
55306653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University