View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4246_low_11 (Length: 392)

Name: NF4246_low_11
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4246_low_11
NF4246_low_11
[»] chr8 (9 HSPs)
chr8 (1-376)||(17751743-17752118)
chr8 (1-376)||(17760730-17761105)
chr8 (114-344)||(17737641-17737872)
chr8 (110-340)||(15734182-15734413)
chr8 (47-95)||(17737876-17737924)
chr8 (344-376)||(21465510-21465542)
chr8 (344-376)||(22197671-22197703)
chr8 (344-376)||(26902104-26902136)
chr8 (344-376)||(31514941-31514973)
[»] chr1 (13 HSPs)
chr1 (341-376)||(2218315-2218350)
chr1 (343-376)||(16812643-16812676)
chr1 (344-376)||(31694639-31694671)
chr1 (345-374)||(5927281-5927310)
chr1 (343-376)||(22515826-22515859)
chr1 (343-376)||(35702541-35702574)
chr1 (343-376)||(47989595-47989628)
chr1 (344-376)||(6427562-6427594)
chr1 (344-376)||(17705546-17705578)
chr1 (344-376)||(21365992-21366024)
chr1 (344-376)||(22947817-22947849)
chr1 (344-376)||(30359452-30359484)
chr1 (344-376)||(37598918-37598950)
[»] chr2 (7 HSPs)
chr2 (338-376)||(44635580-44635618)
chr2 (344-376)||(11223793-11223825)
chr2 (344-376)||(35056966-35056998)
chr2 (344-374)||(39323327-39323357)
chr2 (344-372)||(24975255-24975283)
chr2 (344-376)||(26769609-26769641)
chr2 (344-376)||(37419841-37419873)
[»] chr6 (9 HSPs)
chr6 (344-376)||(426478-426510)
chr6 (346-376)||(5569836-5569866)
chr6 (344-374)||(10770607-10770637)
chr6 (344-373)||(28919488-28919517)
chr6 (343-376)||(32511605-32511638)
chr6 (344-376)||(4878029-4878061)
chr6 (344-376)||(7723199-7723231)
chr6 (344-376)||(10339054-10339086)
chr6 (344-376)||(17327590-17327622)
[»] chr4 (10 HSPs)
chr4 (344-376)||(11596297-11596329)
chr4 (344-376)||(18513175-18513207)
chr4 (344-379)||(42015044-42015079)
chr4 (342-376)||(23292924-23292958)
chr4 (344-376)||(715545-715577)
chr4 (344-376)||(752871-752903)
chr4 (344-376)||(3064868-3064900)
chr4 (344-376)||(5775304-5775336)
chr4 (344-376)||(18966596-18966628)
chr4 (344-376)||(24343600-24343632)
[»] chr3 (7 HSPs)
chr3 (344-376)||(11610596-11610628)
chr3 (345-377)||(32804485-32804517)
chr3 (343-376)||(34185051-34185084)
chr3 (344-376)||(4990912-4990944)
chr3 (344-376)||(8842416-8842448)
chr3 (344-376)||(20503552-20503584)
chr3 (344-376)||(55401162-55401194)
[»] scaffold0027 (1 HSPs)
scaffold0027 (343-376)||(46744-46777)
[»] chr5 (9 HSPs)
chr5 (343-376)||(17123134-17123167)
chr5 (343-376)||(35017130-35017163)
chr5 (343-376)||(39698639-39698672)
chr5 (344-376)||(10298637-10298669)
chr5 (344-376)||(14873609-14873641)
chr5 (344-376)||(19820328-19820360)
chr5 (344-376)||(21576685-21576717)
chr5 (344-376)||(22423764-22423796)
chr5 (344-372)||(32766872-32766900)
[»] scaffold0793 (1 HSPs)
scaffold0793 (344-376)||(4821-4853)
[»] scaffold0475 (1 HSPs)
scaffold0475 (344-376)||(3395-3427)
[»] scaffold0053 (1 HSPs)
scaffold0053 (344-376)||(8885-8917)
[»] chr7 (5 HSPs)
chr7 (344-376)||(5409771-5409803)
chr7 (343-375)||(19213881-19213913)
chr7 (344-376)||(29763129-29763161)
chr7 (344-376)||(30813884-30813916)
chr7 (344-376)||(35862038-35862070)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17752118 - 17751743
Alignment:
Q  1 cccataccctgggtatccaggagacctacattttccctccttgggaattttcggatgaaaacagagagtatgcctaattcagcatcaattatagccataa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17752118 cccatacccggggtatccaggagacctacattttccctccttggggattttcggatgaaaacagagagtatgcctaattcggcatcaattatagccataa 17752019  T
Q  101 ctacaaggatgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaacccaaaatat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17752018 ctacaaggatgttaatctgcatttgacaatctgctcctaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaacccaaaatat 17751919  T
Q  201 tctaagatctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaag 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17751918 tctaagatctatgcagtcaataaaggatggcgaagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaag 17751819  T
Q  301 tttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  17751818 tttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcgcggacactcctcggattaggcgt 17751743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17761105 - 17760730
Alignment:
Q  1 cccataccctgggtatccaggagacctacattttccctccttgggaattttcggatgaaaacagagagtatgcctaattcagcatcaattatagccataa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17761105 cccatacccggggtatccaggagacctacattttccctccttggggattttcggatgaaaacagagagtatgcctaattcggcatcaattatagccataa 17761006  T
Q  101 ctacaaggatgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaacccaaaatat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17761005 ctacaaggatgttaatctgcatttgacaatctgctcctaacatttttcctaattagggcaaccaatcgatcttacatgtacaattaaaaacccaaaatat 17760906  T
Q  201 tctaagatctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaag 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17760905 tctaagatctatgcagtcaataaaggatggcgaagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaag 17760806  T
Q  301 tttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  17760805 tttaatgaaacaatagatgaaataaatattgtattgacacacactatgaagcgcggacactcctcggattaggcgt 17760730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 114 - 344
Target Start/End: Complemental strand, 17737872 - 17737641
Alignment:
Q  114 aatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaa-ttaaaaacccaaaatattctaagatctat 212  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||    
T  17737872 aatctgcaattggcaatctgctcccaacatttttcctaattagggcaaccaatcgatcttacatatacaaattaaatacccaaaatattgtaagatctat 17737773  T
Q  213 gcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaagtttaatgaaaca 312  Q
        ||| | ||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17737772 atgatcattgaagaacggcggagtgtaaccaaaaccaccaaaatgatatagctgtatagtgtgtagcggtatggccactacttcaaagtttaatgaaaca 17737673  T
Q  313 atagatgaaataaatattgtattgacacacac 344  Q
    || |||||||| ||||||||||| || |||||    
T  17737672 attgatgaaattaatattgtattaacgcacac 17737641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 110 - 340
Target Start/End: Complemental strand, 15734413 - 15734182
Alignment:
Q  110 tgttaatctgcatttgacaatctgctccgaacatttttcctaattagggcaaccaatcgatcttacatgtacaa-ttaaaaacccaaaatattctaagat 208  Q
    |||| |||||||  || ||||||||||| |||||||||||||||||||||||||||||||  |||||| ||||| ||||| |||||||||||||||||||    
T  15734413 tgttgatctgcaaatggcaatctgctcctaacatttttcctaattagggcaaccaatcgactttacatatacaaattaaatacccaaaatattctaagat 15734314  T
Q  209 ctatgcagtcaataaaggatggcggagtgtaaccaaaaccaccaaaatgttatagttgtatagtgtgtagcggtatggccactacttcaaagtttaatga 308  Q
    |||    |||||| ||| |||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||| |||| |||||||||||||||||    
T  15734313 ctacatggtcaatgaagaatggcggagtgtaaccaaaaccacaaaaatgctatagctgtatagtgggtagcggtatgaccaccacttcaaagtttaatga 15734214  T
Q  309 aacaatagatgaaataaatattgtattgacac 340  Q
    ||||||| |||||||  |||||||||| ||||    
T  15734213 aacaatacatgaaatttatattgtattaacac 15734182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 17737924 - 17737876
Alignment:
Q  47 attttcggatgaaaacagagagtatgcctaattcagcatcaattatagc 95  Q
    |||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  17737924 attttcggatgaaaacagagagtatagctaatttggcatcaattatagc 17737876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 21465542 - 21465510
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| |||||||||    
T  21465542 ctatgaagcacggacactcctcaaattaggcgt 21465510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 22197671 - 22197703
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||| ||||||||||||||||||||||||||||    
T  22197671 ctataaagcacggacactcctcagattaggcgt 22197703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 26902104 - 26902136
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||| ||||||    
T  26902104 ctatgaagcacggacactcctcagataaggcgt 26902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 31514973 - 31514941
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  31514973 ctatgaagcacggacactcctcggattaggcgt 31514941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 2218350 - 2218315
Alignment:
Q  341 acactatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218350 acactatgaagcacggacactcctcagattaggcgt 2218315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 16812676 - 16812643
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||||||||||||||    
T  16812676 actatgaagcacggacactcctcagattaggcgt 16812643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 31694639 - 31694671
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgt 31694671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 374
Target Start/End: Original strand, 5927281 - 5927310
Alignment:
Q  345 tatgaagcacggacactcctcagattaggc 374  Q
    ||||||||||||||||||||||||||||||    
T  5927281 tatgaagcacggacactcctcagattaggc 5927310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 22515826 - 22515859
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  22515826 actatgaagcacggacactcctcggattaggcgt 22515859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 35702541 - 35702574
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  35702541 actatgaagcacggacactcctcggattaggcgt 35702574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 47989628 - 47989595
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  47989628 actatgaagcacggacactcctcggattaggcgt 47989595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 6427594 - 6427562
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||| |||||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgt 6427562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 17705546 - 17705578
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||| ||||    
T  17705546 ctatgaagcacggacactcctcagattaagcgt 17705578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 21365992 - 21366024
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  21365992 ctatgaagcacggacactcctcggattaggcgt 21366024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 22947849 - 22947817
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  22947849 ctatgaagcacggacactcctcggattaggcgt 22947817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 30359484 - 30359452
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||||||| |||||    
T  30359484 ctatgaagcacggacactcctcagatttggcgt 30359452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 37598950 - 37598918
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgt 37598918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 44635618 - 44635580
Alignment:
Q  338 cacacactatgaagcacggacactcctcagattaggcgt 376  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  44635618 cacacgctatgaagcacggacactcctcagattaggcgt 44635580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 11223793 - 11223825
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgt 11223825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 35056998 - 35056966
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgt 35056966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 39323357 - 39323327
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggc 374  Q
    |||||||||||||||||||||||||||||||    
T  39323357 ctatgaagcacggacactcctcagattaggc 39323327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 24975255 - 24975283
Alignment:
Q  344 ctatgaagcacggacactcctcagattag 372  Q
    |||||||||||||||||||||||||||||    
T  24975255 ctatgaagcacggacactcctcagattag 24975283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 26769641 - 26769609
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgt 26769609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 37419873 - 37419841
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgt 37419841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 426478 - 426510
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgt 426510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 5569866 - 5569836
Alignment:
Q  346 atgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||    
T  5569866 atgaagcacggacactcctcagattaggcgt 5569836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 10770607 - 10770637
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggc 374  Q
    |||||||||||||||||||||||||||||||    
T  10770607 ctatgaagcacggacactcctcagattaggc 10770637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 28919488 - 28919517
Alignment:
Q  344 ctatgaagcacggacactcctcagattagg 373  Q
    ||||||||||||||||||||||||||||||    
T  28919488 ctatgaagcacggacactcctcagattagg 28919517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 32511605 - 32511638
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  32511605 actatgaagcacggacactcctccgattaggcgt 32511638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 4878061 - 4878029
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgt 4878029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 7723199 - 7723231
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  7723199 ctatgaagcacggacactcctcggattaggcgt 7723231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 10339054 - 10339086
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgt 10339086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 17327590 - 17327622
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgt 17327622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 11596297 - 11596329
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgt 11596329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 18513175 - 18513207
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgt 18513207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 42015079 - 42015044
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgttga 379  Q
    ||||||||||||| ||||||||||||||||||||||    
T  42015079 ctatgaagcacggtcactcctcagattaggcgttga 42015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 23292924 - 23292958
Alignment:
Q  342 cactatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||| ||||||||||    
T  23292924 cactatgaagcacggacactcctcggattaggcgt 23292958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 715545 - 715577
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgt 715577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 752871 - 752903
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgt 752903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 3064868 - 3064900
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  3064868 ctatgaagcacggacactcctcggattaggcgt 3064900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 5775304 - 5775336
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  5775304 ctatgaagcacggacactcctcggattaggcgt 5775336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 18966628 - 18966596
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||| |||||||||||    
T  18966628 ctatgaagcacggacactccttagattaggcgt 18966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 24343632 - 24343600
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||||| |||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgt 24343600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 11610628 - 11610596
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||||||||||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgt 11610596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 32804485 - 32804517
Alignment:
Q  345 tatgaagcacggacactcctcagattaggcgtt 377  Q
    |||||||||||||||||||||||||||||||||    
T  32804485 tatgaagcacggacactcctcagattaggcgtt 32804517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 34185051 - 34185084
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  34185051 actatgaagcacggacactcctcggattaggcgt 34185084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 4990912 - 4990944
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgt 4990944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 8842448 - 8842416
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgt 8842416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 20503584 - 20503552
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgt 20503552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 55401194 - 55401162
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgt 55401162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 46777 - 46744
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  46777 actatgaagcacggacactcctcggattaggcgt 46744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 17123167 - 17123134
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  17123167 actatgaagcacggacactcctcggattaggcgt 17123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 35017163 - 35017130
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  35017163 actatgaagcacggacactcctcggattaggcgt 35017130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 39698672 - 39698639
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcgt 376  Q
    ||||||||||||||||||||||| ||||||||||    
T  39698672 actatgaagcacggacactcctcggattaggcgt 39698639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 10298669 - 10298637
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  10298669 ctatgaagcacggacactcctcggattaggcgt 10298637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 14873641 - 14873609
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgt 14873609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 19820328 - 19820360
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgt 19820360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 21576685 - 21576717
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgt 21576717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 22423764 - 22423796
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgt 22423796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 32766872 - 32766900
Alignment:
Q  344 ctatgaagcacggacactcctcagattag 372  Q
    |||||||||||||||||||||||||||||    
T  32766872 ctatgaagcacggacactcctcagattag 32766900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 4821 - 4853
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgt 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3427 - 3395
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 8917 - 8885
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||| ||||||||||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgt 8885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 5409771 - 5409803
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgt 5409803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 19213913 - 19213881
Alignment:
Q  343 actatgaagcacggacactcctcagattaggcg 375  Q
    ||||||||||||||||||||||| |||||||||    
T  19213913 actatgaagcacggacactcctcggattaggcg 19213881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 29763129 - 29763161
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgt 29763161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 30813916 - 30813884
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgt 30813884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 35862070 - 35862038
Alignment:
Q  344 ctatgaagcacggacactcctcagattaggcgt 376  Q
    |||||||||||||||||||||| ||||||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgt 35862038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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