View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_14 (Length: 353)
Name: NF4246_low_14
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 337
Target Start/End: Complemental strand, 8767807 - 8767502
Alignment:
| Q |
33 |
tgaaagatattgaaatcttccatagaaggaacaatgttaaaaaccggcctacttggtaaatgtgaagaatgaaaattttcaacatacttactttttccat |
132 |
Q |
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| T |
8767807 |
tgaaagatattgaaatcttccatagaaggaacaatgttgaaaaccggcctacttggtaaatgtgaagaatgaaaattttcaacatacttactttttccat |
8767708 |
T |
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| Q |
133 |
ttaattaaaggcaaaatcaatattnnnnnnnnnnnnnntatgattaatacatagaaaataaatgatacattcaactcagatatacacccccaatattgcc |
232 |
Q |
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| T |
8767707 |
ttaattaaaggcaaaatcaatattaaaaaagcaaaaaatatgattaatacatagaaaacaaatgatacattcaactcagatatacacccccaatattgcc |
8767608 |
T |
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| Q |
233 |
tttac-tttgttgtaacacaattacctctcatctcacttcttagagttttcaagaaaagaagnnnnnnnngattaattaaatagagtggttttcatgagt |
331 |
Q |
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| T |
8767607 |
tttacttttgttgtaacacaattacctctcatctcacttcttagagttttcaagaaaagaagaaaaaaaagactaattagatagagtggttttcatgagt |
8767508 |
T |
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| Q |
332 |
tcttta |
337 |
Q |
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|||||| |
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| T |
8767507 |
tcttta |
8767502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 8769187 - 8769147
Alignment:
| Q |
31 |
aatgaaagatattgaaatcttccatagaaggaacaatgtta |
71 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||| |
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| T |
8769187 |
aatgaaagatactcaaatcttccatagaaggaacattgtta |
8769147 |
T |
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