View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_15 (Length: 335)
Name: NF4246_low_15
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 8279716 - 8279636
Alignment:
| Q |
16 |
tgttcatgatccatcttaattattttttgtaaaccctgttgaaaaaatgcaataaagaatttacaaagttaataaatgttt |
96 |
Q |
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| T |
8279716 |
tgttcatgatccatcttaattattttttgtaaatcctgttgaaaaaatacaataaagaatttacaaagttaataaatgttt |
8279636 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 8270763 - 8270682
Alignment:
| Q |
243 |
ctatttataggcaaaagaattcttgtccaataagtcacttattttattaactgttgataacttttccaagaaattacttcat |
324 |
Q |
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| T |
8270763 |
ctatttataggcaaaacaattcttgtccaacaagtgacttcttttatcaattgttgataacttttccaagaaattacttcat |
8270682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 8279497 - 8279452
Alignment:
| Q |
217 |
atatcaattaaagatacaaaagttggctatttataggcaaaagaat |
262 |
Q |
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| T |
8279497 |
atatcaattaaagatacataagttggctatttataggcaaaagaat |
8279452 |
T |
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