View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_18 (Length: 309)
Name: NF4246_low_18
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 35334457 - 35334182
Alignment:
| Q |
1 |
ctaaatggaaggagaattaacactaagaataatcactaaaagaatgaaagcactaggctttaggcatcaccggcacatattttataaatacaagactcta |
100 |
Q |
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| T |
35334457 |
ctaaatggaaggagaattaacactaagaataatcactaaaagaatgaaagcactaggctttaggcatcaccggcacatattttataaatacaagactcta |
35334358 |
T |
|
| Q |
101 |
tttaccacagattcgtagaaacattaacataagaaacacgacacattattattaacaacagaaaagatatatagataattgatatgaaccttccagcggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35334357 |
tttaccacagattcgtagaaacattaacataagaaacacgacacattattattaacaacagaaaagatatatagataattgatatgaaccttccagcggg |
35334258 |
T |
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| Q |
201 |
agaagctagaatcatgttttgttcggtcacattgctcccgctttaatctgttgacgaccattattcacttgaatta |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35334257 |
agaagctagaatcatgttttgttcggtcacattgctcccgcttcaatctgttgacgaccattattcacttgaatta |
35334182 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 34827199 - 34827254
Alignment:
| Q |
182 |
atatgaaccttccagcgggagaagctagaatcatgttttgttcggtcacattgctc |
237 |
Q |
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|||||||||||||| | |||||||||||||||||||| || ||||||||||||| |
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| T |
34827199 |
atatgaaccttccaatgagagaagctagaatcatgtttagtgtggtcacattgctc |
34827254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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