View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4246_low_19 (Length: 300)
Name: NF4246_low_19
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 43283565 - 43283848
Alignment:
| Q |
1 |
agagtaacttatcctccactgagagcatcttcttccttaatgataatacatacaaagtcatgattgctacttagagagtgtgtcaaagatgccaagagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43283565 |
agagtaacttatcctccactgagagcatcttcttccttaatgataatacatacaaagtcatgattgctacttagagagtgtgtcaaagatgccaagagtt |
43283664 |
T |
|
| Q |
101 |
ggagtgcaagaatcgtaatatccggaagatcccctaaacttgttacattactgttcataattacatccactattatgcaaatttataatattttgaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43283665 |
ggagtgcaagaatcgtaatatccggaagatcccctaaacttgttacattactgttcataattacatccactattatgcaaatttataatattttgaaaga |
43283764 |
T |
|
| Q |
201 |
agacaacagctgtagaagcaaatagtttgcatcttaggatgcagacaactaacatatggatgctggtgtctcaaattaaataaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43283765 |
agacaacagctgtagaagcaaatagtttgcatcttaggatgcagacaactaacatatggatgctggtgtctcaaattaaataaa |
43283848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University