View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4246_low_21 (Length: 266)
Name: NF4246_low_21
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 36068799 - 36068548
Alignment:
| Q |
18 |
aaatacctcttaagagtgtaactcttttctaaattcaaaggtacttttattttcttgtgtatgctttgtatatggactgagtaatgttttgtccttggct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36068799 |
aaatacctcttaagagtgtaactcttttctaaattcaaaggtacttttattttcttgtgtatgctttgtatatggactgagta-tgttttgtccttggct |
36068701 |
T |
|
| Q |
118 |
aatatctagtaatctctttgtcttttcaaaaacaaatgtaaaagggtgggaattcagcaattaagtgacccacctctctaaagtattaag----ggttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
36068700 |
aatatctagtaatctctttgtcttttcaaaaacaaatgtaaaagggtgggaattcagcaattaagtgacccacctctctaaaatattaaggcatggttac |
36068601 |
T |
|
| Q |
214 |
ttccgatttatttttattttcatttcagcaaataaaaaatgaaaatataaatc |
266 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
36068600 |
ttccaatttatttttattttcatttcaacaaataaaaaaagaatatataaatc |
36068548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 29026725 - 29026658
Alignment:
| Q |
185 |
acccacctctctaaagtattaagggttacttccgatttatttttattttcatttcagcaaataaaaaa |
252 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
29026725 |
acccacctctctaaagtaggcatgtttacttccaatttaatttaattttcatttcagctaataaaaaa |
29026658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University