View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_25 (Length: 238)
Name: NF4246_low_25
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 20380670 - 20380465
Alignment:
| Q |
17 |
acaattgaagtgatgccacataaatgtcgtgtagttcgtgggtgcatagtgtcgtgcactatagcattgctcttaattaaatgaagggtacaattgaaga |
116 |
Q |
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| T |
20380670 |
acaattgaagtgatgccacgtatatgtcgtatagttggtgggtgcatagtgtcgtgcactatatcattgctcttaattaaatgaagggtacaattgaaga |
20380571 |
T |
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| Q |
117 |
agnnnnnnntgttacacgaaacacggtagttttttatataaggtcaaaataatgtttttcatagtgtctaatatcattcctattgttgtggattgttgta |
216 |
Q |
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| T |
20380570 |
agaaaaaaatgttacacgaaacacggtagttttttatataaggtcaaaataatgtttttcataatgtctaatatcattcctattgttgtggattgttgta |
20380471 |
T |
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| Q |
217 |
catatt |
222 |
Q |
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|||||| |
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| T |
20380470 |
catatt |
20380465 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 47308913 - 47308980
Alignment:
| Q |
146 |
ttttttatataaggtcaaaataatgtttttcatagtgtctaatatcattcctattgttgtggattgtt |
213 |
Q |
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| T |
47308913 |
ttttttatataaggttaaaataaagtttttcattgtgtccaatattgttcatattattgtggattgtt |
47308980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 38661676 - 38661734
Alignment:
| Q |
146 |
ttttttatataaggtcaaaataatgtttttc-atagtgtctaatatcattcctattgtt |
203 |
Q |
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| T |
38661676 |
ttttttatataaggtcaaaataatatttttctatagtatccaatattattcctattgtt |
38661734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 17716827 - 17716793
Alignment:
| Q |
179 |
agtgtctaatatcattcctattgttgtggattgtt |
213 |
Q |
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| T |
17716827 |
agtgtctaatatcattcatattgttgtggattgtt |
17716793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 18390703 - 18390768
Alignment:
| Q |
149 |
tttatataaggtcaaaataatg-tttttcatagtgtctaatatcattcctattgttgtggattgtt |
213 |
Q |
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| T |
18390703 |
tttatataaggtcaaaataatgatttttcattgtgtctagtattgtttctattgttgttgattgtt |
18390768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 26194392 - 26194425
Alignment:
| Q |
146 |
ttttttatataaggtcaaaataatgtttttcata |
179 |
Q |
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| T |
26194392 |
ttttttatataaggttaaaataatgtttttcata |
26194425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 12832166 - 12832103
Alignment:
| Q |
148 |
ttttatataaggtcaaaataatgtttttc--atagtgtctaatatcattcctattgttgtggat |
209 |
Q |
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||||||||||||||||||||| |||||| ||| |||| ||||| |||| ||||||||||||| |
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| T |
12832166 |
ttttatataaggtcaaaataagatttttcttataatgtcaaatattattcttattgttgtggat |
12832103 |
T |
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