View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4246_low_3 (Length: 589)
Name: NF4246_low_3
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 41367037 - 41367574
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41367037 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
41367136 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41367137 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccgaatt |
41367236 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41367237 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtctgggtattgcatttgccttacccaacatagagctacctttag |
41367336 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41367337 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaaca |
41367436 |
T |
|
| Q |
413 |
tgacttatgcttgattccttttattcgtcgtccttgatatatgtttgcctaagcatatatgttaacaaatgttcaatttcctgatttggagaatggtttt |
512 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41367437 |
tgacttatgcttgattcctttcattcgtcgtccttgatatatgtttgcctaagcatatatgttaacaaatgttcaatttcctgatttggagaatggtttt |
41367536 |
T |
|
| Q |
513 |
gataaaagtagcaaataagattcaaatctcccaataat |
550 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41367537 |
gataaaagtagcaaataagattcatatctcccaataat |
41367574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 41332861 - 41333289
Alignment:
| Q |
16 |
tcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaagac |
115 |
Q |
| |
|
||||||||||| ||||||| ||||| | |||||| || |||||||||||||||| ||||||||||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
41332861 |
tcaaagaaacattgaggttacatcccgttgcaccattgttaattccaagagaaagtatgaagccatgccaaattaatgggtatgaaatcccagctaagac |
41332960 |
T |
|
| Q |
116 |
aagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattgat |
215 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| | |||||||||||||| || |||||||||| |||||||| ||| |||||||| |||||| |
|
|
| T |
41332961 |
aagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcacaattgaa |
41333060 |
T |
|
| Q |
216 |
ttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagctc |
315 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| ||||||||| | |||| |
|
|
| T |
41333061 |
ttcaaaggcacggacttcgaattcataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctc |
41333160 |
T |
|
| Q |
316 |
agttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaacatga |
415 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||| ||| |||||||||||||||| | |||||||| |||||||||||| || | ||||||||| | || || |
|
|
| T |
41333161 |
aattactttgccactttgattggaagcttcccaataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaagcacga |
41333260 |
T |
|
| Q |
416 |
cttatgcttgattccttttattcgtcgtc |
444 |
Q |
| |
|
|||| || |||||| ||| |||||||| |
|
|
| T |
41333261 |
tctatgtttaattcctattactcgtcgtc |
41333289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 41316884 - 41317263
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | ||||| || ||||||||||||||| | || ||||||||| ||| | ||||| || ||||| || |
|
|
| T |
41316884 |
tcatcaaagaaacattgaggttgtatcctgttgctccattgttagttccaagagaaagtagggagagatgccaaatcaatggttatgagattccagccaa |
41316983 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||| ||| ||||||||| |||| |
|
|
| T |
41316984 |
gacaagggttgctgtcaatgcttgggctattggaagagatccaaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcccaatt |
41317083 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||| | | |
|
|
| T |
41317084 |
gatttcaaaggcacggacttcgaattcataccatttggtgctggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttg |
41317183 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttggg |
392 |
Q |
| |
|
|| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41317184 |
ctaagttactttatcactttgattggaagcttcccaatggaatgaagaatgaagaattggatatgactgagtcatttggg |
41317263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 41287052 - 41287468
Alignment:
| Q |
15 |
atcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| || |||| |
|
|
| T |
41287052 |
atcaaagaaacaatgaggttgcatcctgctataccattgttgattccaagagaaagtatgaagccatgccaaattaatggatatgatatcccggccaaga |
41287151 |
T |
|
| Q |
115 |
caagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattga |
214 |
Q |
| |
|
| ||||| |||| ||||||||||| |||||||||||||| || |||||||| || || ||| ||| || || ||||| ||| ||||||| | |||||| |
|
|
| T |
41287152 |
ctagggttcttgtcaatgcttgggcaattggaagagatccaagatattgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattga |
41287251 |
T |
|
| Q |
215 |
tttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagct |
314 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| || | | |||||||| | ||||| ||| | ||| |
|
|
| T |
41287252 |
tttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgct |
41287351 |
T |
|
| Q |
315 |
cagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaacatg |
414 |
Q |
| |
|
| |||||||| || |||||||||||||||| |||||||||||| ||||||| | |||||||| |||||||||||| || | ||||||||| |||||| |
|
|
| T |
41287352 |
gaattactttatcactttgattggaagcttctcaatggaatgaagtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatg |
41287451 |
T |
|
| Q |
415 |
acttatgcttgattcct |
431 |
Q |
| |
|
|| |||| || |||||| |
|
|
| T |
41287452 |
acctatgattaattcct |
41287468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 58 - 392
Target Start/End: Original strand, 41324993 - 41325327
Alignment:
| Q |
58 |
ttccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgag |
157 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
41324993 |
ttccaagagaaagtagggagagatgccaaatcaatgggtatgaaatcccagctaagacaagggtcatggttaatgcttgggctattggaagagatccaag |
41325092 |
T |
|
| Q |
158 |
gtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattgatttcaaaggcacagactttgaatacataccatttggtgctgga |
257 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325093 |
gtattgggttgatgctgaaagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgctgga |
41325192 |
T |
|
| Q |
258 |
aggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaatga |
357 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||| | || | ||| | ||| ||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
41325193 |
agaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcccaataaaatga |
41325292 |
T |
|
| Q |
358 |
agaatgaagaattggatatgacggagtcatttggg |
392 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||| |
|
|
| T |
41325293 |
agaatgaagaactagatatgaccgagtcatttggg |
41325327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 456
Target Start/End: Complemental strand, 31177950 - 31177509
Alignment:
| Q |
15 |
atcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaaga |
114 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| || ||||||||||||||||||| || ||||||||| ||| | ||||| ||||||||||| | |
|
|
| T |
31177950 |
atcaaagaaacattaaggttgcatccttctttacctttgttgattccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaa |
31177851 |
T |
|
| Q |
115 |
caagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattga |
214 |
Q |
| |
|
|||| || | | |||| |||||| |||||||||||| |||||||||| || || |||||||||| || ||||| ||| |||||||| |||||| |
|
|
| T |
31177850 |
caagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgagagttttaaacccgagaggtttgttaatagcacaattga |
31177751 |
T |
|
| Q |
215 |
tttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagct |
314 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| || ||||||||||| || |||||||| || || ||||||| |||| ||||||| ||||| ||| | ||| |
|
|
| T |
31177750 |
tttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgct |
31177651 |
T |
|
| Q |
315 |
cagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaacatg |
414 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||| |||| |||| |||||| |
|
|
| T |
31177650 |
cagttactttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatg |
31177551 |
T |
|
| Q |
415 |
acttatgcttgattccttttattcgtcgtccttgatatatgt |
456 |
Q |
| |
|
|| |||||||||||||| | | |||||||| || |||||||| |
|
|
| T |
31177550 |
acctatgcttgattcctataactcgtcgtctttaatatatgt |
31177509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 41311089 - 41311468
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||||| || ||||||||||||||| | || ||||||||| ||||| |||| |||||| ||| |
|
|
| T |
41311089 |
tcatcaaagaaacactgaggttgcatccagttgcaccattgttagttccaagagaaagtagggagagatgccaaattaataggcatgagatcccaattaa |
41311188 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
|||||| ||| || ||| |||||||||||||||||||||||| |||||||||||||| || |||| ||||| |||||||| ||| |||||||| |||| |
|
|
| T |
41311189 |
gacaagagtcgttattattgcttgggctattggaagagatccaaggtattgggttgaagctgagagatttaaacctgagaggtttgttaatagcacaatt |
41311288 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| ||||||||| | | |
|
|
| T |
41311289 |
gaattcaaaggcacggactttgaatacataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttg |
41311388 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttggg |
392 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||| |||||||||||||||| | |||||| | |||||||||||| |
|
|
| T |
41311389 |
ctcaattactttaccggtttgattggaagcttcccaataaaatgaagaatgaagaactagatatggctgagtcatttggg |
41311468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 456
Target Start/End: Complemental strand, 31188013 - 31187572
Alignment:
| Q |
15 |
atcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaaga |
114 |
Q |
| |
|
|||| ||||||| ||||| | ||||||||| | || || ||| ||||||||||||||| || ||||||||| ||| | ||||| ||||||||||| | |
|
|
| T |
31188013 |
atcagagaaacattgaggctacatccttctgtgcctttgttggttccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaa |
31187914 |
T |
|
| Q |
115 |
caagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattga |
214 |
Q |
| |
|
|||| || | | |||| |||||| |||||||||||| |||||||||| || || |||||||||| |||||||| ||||| |||||| |||||| |
|
|
| T |
31187913 |
caagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattga |
31187814 |
T |
|
| Q |
215 |
tttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagct |
314 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||||||||| || |||||||| || || ||||||| |||| ||||||| ||||| ||| | ||| |
|
|
| T |
31187813 |
tttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgct |
31187714 |
T |
|
| Q |
315 |
cagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaacatg |
414 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||| | || |||||||| |||||| |
|
|
| T |
31187713 |
cagttactttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggatggctataggaagaaaacatg |
31187614 |
T |
|
| Q |
415 |
acttatgcttgattccttttattcgtcgtccttgatatatgt |
456 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
31187613 |
acctatgcttgattcctattactcgtcgtccttaatatatgt |
31187572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 41328925 - 41329356
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||||| || ||||||||||||||| | || ||||||||| ||| | ||||| ||||||||||| |
|
|
| T |
41328925 |
tcatcaaagaaacattgaggttgcatcccgttgcaccattgttagttccaagagaaagtagggagagatgccaaatcaatgggtatgaaatcccagctaa |
41329024 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| | |||||||||||||| || |||||||||| |||||||| ||| ||||||| | |||| |
|
|
| T |
41329025 |
gacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagtccaatt |
41329124 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||| | ||||| ||| | | |
|
|
| T |
41329125 |
gatttcaaaggcacggacttcgaattcataccatttggtgctggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttg |
41329224 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaaca |
412 |
Q |
| |
|
|| |||||||||| || ||||||||||||||||| |||||||||| || ||||| | |||||||| |||| |||||| || | ||||| ||| |||| |
|
|
| T |
41329225 |
ctaagttactttatcactttgattggaagcttcccaatggaatgagccatcaagaacttgatatgactgagttttttgggattactgtaggtagaaaaca |
41329324 |
T |
|
| Q |
413 |
tgacttatgcttgattccttttattcgtcgtc |
444 |
Q |
| |
|
||| |||| || |||||| || |||||||| |
|
|
| T |
41329325 |
cgacctatgtttaattcctactactcgtcgtc |
41329356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 31225770 - 31226202
Alignment:
| Q |
20 |
agaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaagacaagg |
119 |
Q |
| |
|
||||||| |||| || ||||| ||| ||| || ||| ||||||||||||||| || ||||||||| ||| | ||||| ||||||||||| ||||| |
|
|
| T |
31225770 |
agaaacattgagattacatccatctgcacctttgttggttccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaaga |
31225869 |
T |
|
| Q |
120 |
gtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaattgatttca |
219 |
Q |
| |
|
|| | | |||| |||||| |||||||||||| |||||||||| || || |||||||||| |||||||| ||||| |||||| ||||||||||| |
|
|
| T |
31225870 |
gttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttca |
31225969 |
T |
|
| Q |
220 |
aaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttagctcagtt |
319 |
Q |
| |
|
|||||||| | |||||||||||||| || ||||||||||| || |||||||| || || ||||||| |||| ||||||| ||||| ||| | |||||||| |
|
|
| T |
31225970 |
aaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagtt |
31226069 |
T |
|
| Q |
320 |
actttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaacatgactta |
419 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||| | ||||||||| || ||||| | |
|
|
| T |
31226070 |
actttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctg |
31226169 |
T |
|
| Q |
420 |
tgcttgattccttttattcgtcgtccttgatat |
452 |
Q |
| |
|
|||||||||||| | | ||||||||||| |||| |
|
|
| T |
31226170 |
tgcttgattcctatcactcgtcgtccttaatat |
31226202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 96 - 431
Target Start/End: Original strand, 41305279 - 41305614
Alignment:
| Q |
96 |
tatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagat |
195 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| | |||||||||||| || |||||||||| || ||||| | |
|
|
| T |
41305279 |
tatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagatccaaagtattgggttgaagctgagagttttaaacccgagaggt |
41305378 |
T |
|
| Q |
196 |
ttcttaatagccaaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaa |
295 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |
|
|
| T |
41305379 |
ttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggcattgcatttgccttatcaaa |
41305478 |
T |
|
| Q |
296 |
catagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggctt |
395 |
Q |
| |
|
| || || ||| | ||| | |||||||| | ||||||||||||||||| || ||||||| || ||||| | |||||||| ||||||||||||||| |
|
|
| T |
41305479 |
tgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatgagccatcaagaacttgatatgaccgagtcatttgggctt |
41305578 |
T |
|
| Q |
396 |
gcagtaggaagagaacatgacttatgcttgattcct |
431 |
Q |
| |
|
||||||||| |||| ||| |||| ||||||||| |
|
|
| T |
41305579 |
agtgtaggaagaaaacacgacctatgtttgattcct |
41305614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 41337665 - 41338099
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||| | ||| | |||||| || |||| || ||| ||||||||||||||| || ||| |||| ||| | ||||| ||||||||||| |
|
|
| T |
41337665 |
tcatcaaagaaacatttaggctacatcctactgtacctttgttggttccaagagaaagtagagagagatgtgaaatcaatgggtatgagatcccagctaa |
41337764 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
||||||||| ||| |||| |||||| |||||||||||||| | |||||||||||| || |||||||||| |||||||| ||| |||||||| |||| |
|
|
| T |
41337765 |
gacaagggttgctgtcaatgtttgggcaattggaagagatccaaagtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaatt |
41337864 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| | ||||| ||| | | |
|
|
| T |
41337865 |
gatttcaaaggcacagactttgaattaataccatttggtgctggaagaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttg |
41337964 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaaca |
412 |
Q |
| |
|
|| |||| ||||| || ||||||||||| |||||||||||||||| || ||||| | |||||||| || |||||||| ||| | || |||| | | || |
|
|
| T |
41337965 |
ctaagttgctttatcactttgattggaaacttccaaatggaatgagccatcaagaacttgatatgactgaatcatttggacttactgttggaaaaaagca |
41338064 |
T |
|
| Q |
413 |
tgacttatgcttgattccttttattcgtcgtcctt |
447 |
Q |
| |
|
||| |||| ||||| ||| ||| ||||||||||| |
|
|
| T |
41338065 |
tgatgtatgtttgatccctattactcgtcgtcctt |
41338099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 212 - 452
Target Start/End: Original strand, 41369921 - 41370161
Alignment:
| Q |
212 |
tgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctaccttta |
311 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| ||| || |||||||||||||| || ||| |||| |||||| ||| | ||| | ||| | |
|
|
| T |
41369921 |
tgatttcaaaggtatagactttgaatacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctctt |
41370020 |
T |
|
| Q |
312 |
gctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaac |
411 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||| || ||| || |||| || |
|
|
| T |
41370021 |
gctagtttactttaccactttgattggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattacagcagtaagaaaat |
41370120 |
T |
|
| Q |
412 |
atgacttatgcttgattccttttattcgtcgtccttgatat |
452 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
41370121 |
atgatttatgcttgattcctattattcgtcgtatttgatat |
41370161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 41311706 - 41311799
Alignment:
| Q |
330 |
tttgattggaagcttccaaatggaatgaagaatgaagaattggatatgac--ggagtcatttgggcttgcagtaggaagagaacatgacttatg |
421 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||| | |||| |||||| |||||||| |||| |
|
|
| T |
41311706 |
tttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgactgagagtcatttgggcatacagtcggaagaaaacatgacctatg |
41311799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 563
Target Start/End: Complemental strand, 31187510 - 31187445
Alignment:
| Q |
498 |
ttggagaatggttttgataaaagtagcaaataagattcaaatctcccaataatatgtatggtgttc |
563 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||| ||||| ||||||||||| |||||| ||||| |
|
|
| T |
31187510 |
ttggagaatgattgtgataaatgtagcaaataacattcatttctcccaataaggtgtatgatgttc |
31187445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 41333428 - 41333500
Alignment:
| Q |
330 |
tttgattggaagcttccaaatggaatgaagaatgaagaattggatatga--cggagtcatttgggcttgcagt |
400 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||| | ||||||| ||||||||||||||| |||| |
|
|
| T |
41333428 |
tttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgattgagagtcatttgggcttacagt |
41333500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 17248832 - 17248415
Alignment:
| Q |
13 |
tcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaaataaatagatatgatatcccagctaa |
112 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | ||||||| |||||||| ||| |||||| | | ||| | ||| || | |||||||| |||||||| |
|
|
| T |
17248832 |
tcatcaaagaaacactgaggctgcatcctattgtaccattgttgattcctagacaaagtagggaaaaatgtcgaatcaacgggtatgatattccagctaa |
17248733 |
T |
|
| Q |
113 |
gacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccaaatt |
212 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||| |||||||||||||| || ||||||| || ||||| || ||| ||||||||| |||| |
|
|
| T |
17248732 |
gacaagggttgctgttaatgtttgggcaattggaagagatcaaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagcccaatt |
17248633 |
T |
|
| Q |
213 |
gatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggtattgcatttgccttacccaacatagagctacctttag |
312 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||| ||| | ||| | | |
|
|
| T |
17248632 |
gatttcaaaggcatgaatttcgaatacataccatttggtgctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttg |
17248533 |
T |
|
| Q |
313 |
ctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgacggagtcatttgggcttgcagtaggaagagaaca |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| |||||||||||| || || || ||||| || | |
|
|
| T |
17248532 |
ctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgagtcatttgggattacaataagaagaaaaaa |
17248433 |
T |
|
| Q |
413 |
tgacttatgcttgattcc |
430 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
17248432 |
tgacctgtgcttgattcc |
17248415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 23024207 - 23024152
Alignment:
| Q |
324 |
taccattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgac |
379 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | |||||||||||| ||||| |
|
|
| T |
23024207 |
taccattttgattggaagcttcctaatggaatcaaaagtgaagaattggacatgac |
23024152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 22946452 - 22946389
Alignment:
| Q |
211 |
ttgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccggg |
274 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
22946452 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccggg |
22946389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 22855321 - 22855276
Alignment:
| Q |
240 |
ataccatttggtgctggaaggaggatgtgtccgggtattgcatttg |
285 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
22855321 |
ataccatttggtgctgggagaaggatgtgtccgggcatcgcatttg |
22855276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 22986326 - 22986265
Alignment:
| Q |
210 |
attgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtcc |
271 |
Q |
| |
|
|||||||||||||| || | ||||| ||||| |||||||||||||||||||| || ||||| |
|
|
| T |
22986326 |
attgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcc |
22986265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 22971999 - 22971951
Alignment:
| Q |
211 |
ttgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
259 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
22971999 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaag |
22971951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 23036102 - 23036050
Alignment:
| Q |
327 |
cattttgattggaagcttccaaatggaatgaagaatgaagaattggatatgac |
379 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || | |||||||||||| ||||| |
|
|
| T |
23036102 |
cattttgactggaagcttccaagtggaatcaaaagtgaagaattggacatgac |
23036050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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