View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_31 (Length: 207)
Name: NF4246_low_31
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 42443486 - 42443652
Alignment:
| Q |
15 |
agcaaaggagg-tatggtaaaaggaagaaagtaataaattaataagttttgtcaaaagtgaaaaaattaataggtctaactaatacaaataaaacatata |
113 |
Q |
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| T |
42443486 |
agcaaaggagggtatggtaaaaggaagaaagtaat--------aagttttgtcgaaagtgaaaaaaataataggtctaactaatacaaataaaacatata |
42443577 |
T |
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| Q |
114 |
ttaacaacaactggtcatggctacaatgcaaacattgcactatctgcctgtcatgtcctcattcatctctagatg |
188 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42443578 |
ttaataacaactggtcatggctacaaagcaaacattgcactatctgcttgtcatgtcctcattcatctctagatg |
42443652 |
T |
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