View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_5 (Length: 540)
Name: NF4246_low_5
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 524
Target Start/End: Complemental strand, 38125041 - 38124543
Alignment:
| Q |
15 |
cagacacatatcaaattgctctaaaaacattcataaaccaagataatgttaattcaatttctcattagctataaagatcacataaagaaaggagacataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38125041 |
cagacacatatcaaattgctctaaaaacattcataaaccaagataatgttaattcaatttctcattagctataaaga-----------aaggagacataa |
38124953 |
T |
|
| Q |
115 |
tgcatttagaattagcttatttaccacttatcttgtcttatagcataaactttgttttaacaaggttataaaaatagttaatgccatgacatcttagtaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38124952 |
tgcatttagaattagcttatttaccacttatcttgtcttatagcataaactttgttttaacaaggttataaaaatagttaatgacatgacatcttagtaa |
38124853 |
T |
|
| Q |
215 |
cctagtttccgtttatttcaacaagtgttccggacaacttatgtaaacaacttacagaaatgcttattcgataaaagttcattaaatatgtgagacaaac |
314 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124852 |
cctagtttcagtttatttcaacaagtgttccggacaacttatgcaaacaacttacagaaatgcttattcgataaaagttcattaaatatgtgagacaaac |
38124753 |
T |
|
| Q |
315 |
aagtgtaccttggtgtggcgagaaatgtttgcattcacaatttgtgctctagcgtttgcatatcgccactgaatcaaacggttatcaagcaaacgaagct |
414 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124752 |
aagtgtacctcggtgtggcgagaaatgtttgcattcacaatttgtgctctagcgtttgcatatcgccactgaatcaaacggttatcaagcaaacgaagct |
38124653 |
T |
|
| Q |
415 |
tatgaacgtcttcattatttccaaaaccattcgacggtgaattaaggccaacagattttttactcttgaagaaatcaaaaccaaaattgagtagtttttc |
514 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124652 |
tatgaacgtcttcattgtttccaaaaccattcgacggtgaattaaggccaacagattttttactcttgaagaaatcaaaaccaaaattgagtagtttttc |
38124553 |
T |
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