View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_6 (Length: 512)
Name: NF4246_low_6
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 202 - 497
Target Start/End: Original strand, 33354599 - 33354894
Alignment:
| Q |
202 |
ccatctaaacttatcttgcaagattgacacaaagtaaaaagaacaaaataattaaaaattgttaggttctgtttggtcaaccataaatggacttgctaag |
301 |
Q |
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| T |
33354599 |
ccatctaaacttatcttgcaagattgacacaaagtaaaaagaacaaaataattaaaaattgttaggttctgtttggtcaaccataaatggacttgctaag |
33354698 |
T |
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| Q |
302 |
aaactcaaattttggaagcactcataactatagctgataaggtgaactcatattgaaaaatcagaacactgcccattaaatcatatgacaaatccatcat |
401 |
Q |
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| T |
33354699 |
aaactcaaattttggaagtactcataactatagctgataaggtgaactcattttgaaaaatcagaacactgcccattaaatcatattacaaatccatcat |
33354798 |
T |
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| Q |
402 |
cccaaacttaaagctttcactaaaacacaaaaacagccaaagacaacctaatacttcagcatctctgtctttctctctccatcactctcactttca |
497 |
Q |
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| T |
33354799 |
cccaaacttaaagctttcactaaaacacaaaaacagccaaacacaacctaatacttcagcatctctgtctttctctctccatcactctcactttca |
33354894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 33354409 - 33354537
Alignment:
| Q |
12 |
tatactacacagtaaaaatagataaaaaattgaagttagttttatttttcttttctccaattgctattgcttcttcactaataaaaatccagaaaacttt |
111 |
Q |
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| T |
33354409 |
tatactacacagtaaaaatagataaaaaattgaagttagttttatttttcttttctccaattgctattgcttcttcactaataaaaatccagaaaacttt |
33354508 |
T |
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| Q |
112 |
atgagaattattaatgtagagcttcttgt |
140 |
Q |
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| T |
33354509 |
atgagaattattaatgtagagcttcttgt |
33354537 |
T |
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