View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_7 (Length: 487)
Name: NF4246_low_7
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 3 - 481
Target Start/End: Complemental strand, 3447805 - 3447326
Alignment:
| Q |
3 |
ttgacttttttcttacataaaggcgtcagactcaatgcatattaagaggacagatatttgtcattgttaacgaatatcaaatataagattgtcggcgaac |
102 |
Q |
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| T |
3447805 |
ttgacttttttcttacataaaggcttcagactcaatgaatatgaagaggacagatatttgtcgttgttaacgaatatcaaatataagattgtcggcgaac |
3447706 |
T |
|
| Q |
103 |
atgtaacaaaggcgattttagaggtctctaagccacaaaacagggattatccaaaagcatcgcacaatccacttcggttgaaatcaatttgaggagtcta |
202 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||| |
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| T |
3447705 |
atgtaacaaaggtgattttagaggtctctaagccacaaaacatggattattcaaaagcatcacacaatccacttcggttgagatcaatttgacgagtcta |
3447606 |
T |
|
| Q |
203 |
aaatgtaaaatctaatacataggctatcctcaaaattgatttcaaccgaa-caggtagcttgatgctttgatataacaactgaattttgattgttttgag |
301 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447605 |
aaatgtaaaatctaatacttaggctatcctcaaaattgatttcaaccgaaacaggtagcttgatgctttgatataacaactgaattttgattgttttgag |
3447506 |
T |
|
| Q |
302 |
tgcactttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgaatattggccttgtcttggatttggttgctttgaat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447505 |
tgcactttatgtcctaaactgttcctgcatttgaatgttttgattgttaagtcggccttttctgaatattggccttgtcttggatttggttgctttgaat |
3447406 |
T |
|
| Q |
402 |
tgctgagttggtccttttgtgtgtgaaataaagaacaaataggttcctttatgtgaattttgtaaattgaacttgatgat |
481 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3447405 |
tgctgagttggtccttttatgtgtgaaataaagaacaaaaaggttcctttatgtgaattttgtaaattgaacttgatgat |
3447326 |
T |
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