View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4246_low_9 (Length: 403)
Name: NF4246_low_9
Description: NF4246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4246_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 116 - 391
Target Start/End: Complemental strand, 8981388 - 8981113
Alignment:
| Q |
116 |
aagagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcannnnnnnnnnnnnnnnnggataggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8981388 |
aagagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcattttctttttcttttttggataggt |
8981289 |
T |
|
| Q |
216 |
tatatatcttgctttctttcctgcactactcataaacagaacaggcnnnnnnngagaccacatgtgcctcaaaaaagataaggccaccgcttctgtctct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
8981288 |
tatatatcttgctttctttcctgcactactcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctct |
8981189 |
T |
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| Q |
316 |
ttgctactattgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
391 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8981188 |
ttgctactactgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
8981113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 25104287 - 25104191
Alignment:
| Q |
17 |
agtaattgctcaaaggcacctaaaactgacaaaaataagatggcctacaaattaaaataaaagaatcaaatgcatgaccaaaaactgttgaaatatataa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25104287 |
agtaattgctcaaaggcacctaaaactgacaaaaataagatggcctacaaatta----aaaagaatcaaatgcatgaccaaaaactgttgaaatatataa |
25104192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 25163380 - 25163284
Alignment:
| Q |
17 |
agtaattgctcaaaggcacctaaaactgacaaaaataagatggcctacaaattaaaataaaagaatcaaatgcatgaccaaaaactgttgaaatatataa |
116 |
Q |
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| T |
25163380 |
agtaattgctcaaaggcacctaaaactgacaaaaataagatggcctacaaatta----aaaagaatcaaatgcatgaccaaaaactgttgaaatatataa |
25163285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 25129567 - 25129510
Alignment:
| Q |
55 |
gatggcctacaaattaaaataaaagaatcaaatgcatgaccaaaaactgttgaaatat |
112 |
Q |
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||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
25129567 |
gatggtctacaaattaaactagaagaatcaaatgcatgaccaaaaactgtcgaaatat |
25129510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 25071594 - 25071536
Alignment:
| Q |
55 |
gatggcctacaaattaaaataaaagaatcaaatgcatg-accaaaaactgttgaaatat |
112 |
Q |
| |
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||||| |||||||||||| || |||||||||||||||| |||||||||||| ||||||| |
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| T |
25071594 |
gatggtctacaaattaaactagaagaatcaaatgcatgaaccaaaaactgtcgaaatat |
25071536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 117 - 391
Target Start/End: Original strand, 2471519 - 2471793
Alignment:
| Q |
117 |
agagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcannnnnnnnnnnnnnnnnggataggtt |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2471519 |
agagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcattttctttttcttttttggataggtt |
2471618 |
T |
|
| Q |
217 |
atatatcttgctttctttcctgcactactcataaacagaacaggcnnnnnnngagaccacatgtgcctcaaaaaagataaggccaccgcttctgtctctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
2471619 |
atatatcttgctttctttcctgcactactcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctctt |
2471718 |
T |
|
| Q |
317 |
tgctactattgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
391 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2471719 |
tgctactactgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
2471793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 1416170 - 1416125
Alignment:
| Q |
113 |
ataaagagccttgctatatctcgcgagagattatctcacgagaatt |
158 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
1416170 |
ataaagagcattgctatatctcgcgagagattttctcacgagaatt |
1416125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 117 - 391
Target Start/End: Original strand, 27134717 - 27134992
Alignment:
| Q |
117 |
agagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcannnnnnnnnnnnnnnnnggataggtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27134717 |
agagccttgctatatctcgcgagagattatctcacgagaattccaagaaaacaactttttgttatgttccatcattttctttttcttttttggataggtt |
27134816 |
T |
|
| Q |
217 |
atatatcttgctttctttcctgcactactcataaacagaacaggcnnnnnnngagaccacatgtgcctcaaaaaa-gataaggccaccgcttctgtctct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||||||||||||||||||| |
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| T |
27134817 |
atatatcttgctttctttcctgcactactcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaaagacaaggccaccgcttctgtctct |
27134916 |
T |
|
| Q |
316 |
ttgctactattgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
391 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27134917 |
ttgctactactgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
27134992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 391
Target Start/End: Original strand, 11322228 - 11322411
Alignment:
| Q |
209 |
gataggttatatatcttgctttctttcctgcactactcataaacagaacaggcnnnnnnn-gagaccacatgtgcctcaaaaaagataaggccaccgctt |
307 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||| ||||| |||| ||| ||| ||| ||||||| |||||||| || ||||||||| |
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| T |
11322228 |
gataggctatatatctttctttctctcctgcactactgataaatagaaaagggaaagaaaagaggccatgtgtgcctaaaaaaagacaaagccaccgcta |
11322327 |
T |
|
| Q |
308 |
ctgtctctttgctac-tattgttactaggcatcttataaaccaccatcattagctcactatattgcaagcatgtgatcatatatt |
391 |
Q |
| |
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||||| ||| |||| || |||||||| || ||||||||||||| ||| |||| |||| ||||||||||| | |||||||||| |
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| T |
11322328 |
ctgtcactta-ctacataaagttactagtcaccttataaaccaccgtcactagcatactacattgcaagcatatcatcatatatt |
11322411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 573972 - 574095
Alignment:
| Q |
269 |
gagaccacatgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactattgttactaggcatc-ttataaaccaccatcattagctcactat |
367 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
573972 |
gagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactactgttactaggcatctttataaaccaccatcattagctcactat |
574071 |
T |
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| Q |
368 |
attgcaagcatgtgatcatatatt |
391 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
574072 |
attgcaagcatgtgatcatatatt |
574095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 47683539 - 47683501
Alignment:
| Q |
344 |
aaaccaccatcattagctcactatattgcaagcatgtga |
382 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||| |
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| T |
47683539 |
aaaccaccatcattagctcactacatcgcaagcatgtga |
47683501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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