View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_high_11 (Length: 259)
Name: NF4247_high_11
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 44567451 - 44567702
Alignment:
| Q |
1 |
atttatattttttcattctctcgttcgtttgtagannnnnnnnatatcacaaatataccatgtctaactttacttttactatataacagggaaggtcgga |
100 |
Q |
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| T |
44567451 |
atttatattttttcattctctcgttcgtttgtagattttttttatatcacaaatataccatgtctaattttacttttactatataacagggaaggtcgga |
44567550 |
T |
|
| Q |
101 |
gggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567551 |
gggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactg |
44567650 |
T |
|
| Q |
201 |
agaccggaagctctcgaaatatcattatagttggactgtcattgttcttctc |
252 |
Q |
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| T |
44567651 |
agaccggaagctctcgaaatatcattatagttggactgtcattgttcttctc |
44567702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 36029299 - 36029104
Alignment:
| Q |
58 |
ccatgtctaactttacttttactatat-aacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtg |
156 |
Q |
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| T |
36029299 |
ccatgtttaattttgcttttactatattaacagggaaggttggagggttcattgcttcaattcctggagtcatggttgctggtctcctctgctttatgtg |
36029200 |
T |
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| Q |
157 |
ggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctc |
252 |
Q |
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| T |
36029199 |
ggcaatgcttacagcattgggcttgtccaatctacgctatagtgaggctggaagctctcgcaatatcataataattggattatcattgttcttctc |
36029104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 20126433 - 20126587
Alignment:
| Q |
98 |
ggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctata |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||| | |||||||| ||||||||||| | |
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| T |
20126433 |
ggagggttcattgcttcaattcctgaagttatggttgctggtctcctctgcttcatgtgggcaatgctcacagcttggggcttgtcaaatctacgctaca |
20126532 |
T |
|
| Q |
198 |
ctgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctc |
252 |
Q |
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|||| ||||||||||||| |||||||| |||||||| | |||||||| ||||| |
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|
| T |
20126533 |
gtgaggccggaagctctcgcaatatcatcatagttgggttatcattgtttttctc |
20126587 |
T |
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