View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4247_high_2 (Length: 982)

Name: NF4247_high_2
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4247_high_2
NF4247_high_2
[»] chr8 (11 HSPs)
chr8 (20-861)||(31645514-31646355)
chr8 (60-238)||(31637300-31637478)
chr8 (249-391)||(31651402-31651544)
chr8 (598-786)||(31636351-31636536)
chr8 (874-972)||(31644645-31644743)
chr8 (238-374)||(31637087-31637223)
chr8 (247-391)||(31656176-31656320)
chr8 (251-370)||(31629825-31629944)
chr8 (80-238)||(31630036-31630188)
chr8 (83-208)||(31651626-31651751)
chr8 (80-176)||(31656437-31656533)
[»] chr5 (1 HSPs)
chr5 (84-207)||(9105454-9105578)
[»] chr7 (1 HSPs)
chr7 (917-967)||(12824143-12824193)


Alignment Details
Target: chr8 (Bit Score: 763; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 20 - 861
Target Start/End: Complemental strand, 31646355 - 31645514
Alignment:
Q  20 gtttaagtatatgatgaaacataacatgccatgtataaatgcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttg 119  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646355 gtttaaatatatgatgaaatataacatgccatgtataaatgcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttg 31646256  T
Q  120 ctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646255 ctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttgg 31646156  T
Q  220 catcaatgaagtggcaatgaaaaagagaaatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttgg 319  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  31646155 catcaatgaagtggcaatgaaaaagaaaaatctaacctgttgtccacactctttcccgtttcatcgtcaaca---gtcgatttatgcatactaggcttgg 31646059  T
Q  320 ctatattgattagatgttcacattcctcttttgtctgcttagatcaatcagctaagccttagtatttgggaattgtaaacaatctaacattataatacat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646058 ctatattgattagatgttcacattcctcttttgtctgcttagatcaatcagctaagccttagtatttgggaattgtaaacaatctaacattataatacat 31645959  T
Q  420 taatactatactaaaagattaactttgaagtttgaac-atgtcgatatataattaaagaatataagcatatcatgtgtaaagtgatattccagggtttcg 518  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31645958 taatactatattaaaatattaactttgaagtttgaacgatgtcgatatataattaaagaatataggcatatcatgtgtaaagtgatattccagggtttcg 31645859  T
Q  519 aacaatgcctctcttctaaaacttcaacaggttataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31645858 aacaatgcctctcttctaaaacttcaacaggttataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctca 31645759  T
Q  619 tgatattcaaacctttcctaaaccaagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtttgatgaagtgtttatgggtgagggtt 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  31645758 tgatattcaaacctttcctaaaccaagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtatgatgaagtgtttttgggtgagggtt 31645659  T
Q  719 agttaatctgaaacataaatgatgcggttat-tttgattttgaaattgaaatgttatagatcatctatcatattattttttcaattttc-aaaattttag 816  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31645658 agttaatctgaaacataaatgatgcggttataattgattttgaaattgaaatcttatagatcatctatcatattattttttcaattttcaaaaattttag 31645559  T
Q  817 atatctaccaaaatagagacttttggtatgaataattattgaaaa 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31645558 atatctaccaaaatagagacttttggtatgaataattattgaaaa 31645514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 31637478 - 31637300
Alignment:
Q  60 gcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgata 159  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||| |||||||| ||||    
T  31637478 gcagacaaaatgcataaagaacacacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgata 31637379  T
Q  160 aaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatg 238  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  31637378 aaagttccagagcttgttcgtgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaagtggcaatg 31637300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 249 - 391
Target Start/End: Complemental strand, 31651544 - 31651402
Alignment:
Q  249 atctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctct 348  Q
    |||||||| |||||||||||  ||||| ||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31651544 atctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctatattgattagatgttcacattcctct 31651445  T
Q  349 tttgtctgcttagatcaatcagctaagccttagtatttgggaa 391  Q
    |||||||||| ||||||||||||| |||||||| |||| ||||    
T  31651444 tttgtctgctcagatcaatcagcttagccttagcatttaggaa 31651402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 598 - 786
Target Start/End: Complemental strand, 31636536 - 31636351
Alignment:
Q  598 tttttatatatttttccctcatgatattcaaacctttcctaaac--caagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtttga 695  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  31636536 tttttttatctttttccctcatgatattcaaacctttcctaaacgacaagaaaatatcttgacctctaaaaatattattgaata-gctatttttgtttga 31636438  T
Q  696 tgaagtgtttatgggtgagggttagttaatctgaaacataaatgatgcggttat-tttgattttgaaattgaaatgttata-gatcatctatc 786  Q
    |||||||||| ||||||||  |||||| || ||||||||||||      |||||  |||||||||||||||||||| |||| |||||||||||    
T  31636437 tgaagtgtttttgggtgagtattagttgatttgaaacataaat------gttataattgattttgaaattgaaatggtatacgatcatctatc 31636351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 874 - 972
Target Start/End: Complemental strand, 31644743 - 31644645
Alignment:
Q  874 ttgtgacttgggtgtcaaggatatcgtctttgagaccgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttgcttct 972  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31644743 ttgtgacttgggtgtgaaggatatcgtctttgagactgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttgattct 31644645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 238 - 374
Target Start/End: Complemental strand, 31637223 - 31637087
Alignment:
Q  238 gaaaaagagaaatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgtt 337  Q
    |||||||| |||||||||||||||| |||||||||||| |||  ||| ||||||||||||||||| |||| |  ||||||||||||||||||||||||||    
T  31637223 gaaaaagaaaaatctaacctgctgttcacactctttcctgttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgtt 31637124  T
Q  338 cacattcctcttttgtctgcttagatcaatcagctaa 374  Q
    ||||||||||||||| ||||| |||| || |||||||    
T  31637123 cacattcctcttttgcctgctaagattaaccagctaa 31637087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 247 - 391
Target Start/End: Complemental strand, 31656320 - 31656176
Alignment:
Q  247 aaatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcct 346  Q
    |||||||||||||||| || ||||||||| ||||  ||||||| |||   ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31656320 aaatctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcct 31656221  T
Q  347 cttttgtctgcttagatcaatcagctaagccttagtatttgggaa 391  Q
    |||||||||||| ||||||||||| | |||||||| |||| ||||    
T  31656220 cttttgtctgctcagatcaatcagtttagccttagcatttaggaa 31656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 31629944 - 31629825
Alignment:
Q  251 ctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctcttt 350  Q
    ||||||||||||||  ||||||||| |||||||  ||||||||||  ||||| |||||||| ||||||||| ||||||||||||||||||||||||  ||    
T  31629944 ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctt 31629845  T
Q  351 tgtctgcttagatcaatcag 370  Q
    ||||||||||||||||||||    
T  31629844 tgtctgcttagatcaatcag 31629825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 31630188 - 31630036
Alignment:
Q  80 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacg 179  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||  ||||||||  | |||||||||||||||||| ||    
T  31630188 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtcaagaaaagttccagagcttgttcg 31630089  T
Q  180 tgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatg 238  Q
    | | ||||||||      |||||||||||||||||||   ||||||||||||| |||||    
T  31630088 tacgctaaatgc------aatatgtaaacaaaaggttaaccatcaatgaagtgacaatg 31630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 31651751 - 31651626
Alignment:
Q  83 cacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgc 182  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||| |||| |||||  |||||| || | ||||| |||||||||||| ||| |    
T  31651751 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtccgttc 31651652  T
Q  183 actaaatgcaaaagaaatatgtaaac 208  Q
     |||||| || ||  |||||||||||    
T  31651651 cctaaatacagaatgaatatgtaaac 31651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 31656533 - 31656437
Alignment:
Q  80 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgt 176  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||||  | ||||||  | ||| ||||||||||||||    
T  31656533 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtcaagaaatgttccagagcttgt 31656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 9105454 - 9105578
Alignment:
Q  84 acctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgca 183  Q
    ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||| |||||| |||| |||   | ||| ||||||||||| |||||  |     
T  9105454 acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaatcttatcacgtcccctggccagaaatgttccagagctagtacgcact 9105553  T
Q  184 ctaaatgca-aaagaaatatgtaaa 207  Q
    ||| ||| | |||||||||||||||    
T  9105554 ctacatgtagaaagaaatatgtaaa 9105578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 917 - 967
Target Start/End: Complemental strand, 12824193 - 12824143
Alignment:
Q  917 cttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttg 967  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||| ||||    
T  12824193 cttgctctttttcatatggccaagaaaggtcataccacttatactcatttg 12824143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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