View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_high_6 (Length: 549)
Name: NF4247_high_6
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 44243141 - 44242611
Alignment:
| Q |
19 |
catggatgatactaggttcggattcaaagcattaactgaatgttgaaagttcagtacgggcataaaatgtatgaattacgcagatgtctagttcaacagt |
118 |
Q |
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| T |
44243141 |
catggatgatactaggttcggattcaaagcattaactgaatgttgaaagttcagtacgggcataaaatgtatgaattacgcagatgtctagttcaacagt |
44243042 |
T |
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| Q |
119 |
gttgtgtctgagcccttaaaatcttgatgttgggtttgaaactttgaactcatgctgccccactatgagtgttttttatccccaaaatcccgttggccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44243041 |
gttgtgtctgagcccttaaaatcttgatgttgggtttgaaactttgaactcatgctgccccactatgagtgttttttatccccaaaatcccgttggccaa |
44242942 |
T |
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| Q |
219 |
ttgacattgagaaatgagaaccagcttctggaaggaatatcttgtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatcaa |
318 |
Q |
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| T |
44242941 |
ttgacattgagaaatgagaaccagcttctggaaggaatatcttgtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatcaa |
44242842 |
T |
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| Q |
319 |
acgtcactgt-----tatggcttgaatatttaaggtttaatcacnnnnnnnaaaacatttgagtaattcaagggattgtgataatgatgatgacacggac |
413 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44242841 |
acgtcactgttatgttatggcttgaatatttaaggtttaatcactttttttaaaacatttgagtaattcaagggattgtgataatgatgatgacacggac |
44242742 |
T |
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| Q |
414 |
ccagagtgaaggttcttccttattaatgtcggtaagggacagagattttggtaaaagcaaggtaccctacacttatctcatccgaaagtagtgcaaatat |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44242741 |
ccagagtgaaggttcttccttattaatgtcggtaagggacagagattttggtaaaagcaaggtaccctacacttacctcatccgaaagtagtgcaaatat |
44242642 |
T |
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| Q |
514 |
gaaaaaagaaaaggacaagttctgtgctgct |
544 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
44242641 |
gaaaaaagaaaaggacaagttctgtgttgct |
44242611 |
T |
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