View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_high_9 (Length: 401)
Name: NF4247_high_9
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 38630497 - 38630107
Alignment:
| Q |
1 |
tagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccacgcatgtggttccacatggtaagatgtaaatttaaatgta |
100 |
Q |
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| T |
38630497 |
tagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccacgcatgtggttccacatggtaagatgtaaatttaaatgta |
38630398 |
T |
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| Q |
101 |
actgtatttttaccttctttgtatcatcagcagcagctaaaactttcttcctctaacaggtggccatacccatttcttgagcttaatattccatgggctc |
200 |
Q |
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| T |
38630397 |
actgtatttttaccttctttgtatcatcagcagcagctaaagctttcttcctctaacaggtggccatacccatttcttgagcttaatattccatgggctc |
38630298 |
T |
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| Q |
201 |
ccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctatacaaaatacttgttattctcactaatgtatcttgtctat |
300 |
Q |
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| T |
38630297 |
ccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctataccaaatacttgttattctcactaatgtatcttgtctat |
38630198 |
T |
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| Q |
301 |
aggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacaggttct |
391 |
Q |
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| T |
38630197 |
aggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacagattct |
38630107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
280 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
363 |
Q |
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| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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