View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_low_11 (Length: 337)
Name: NF4247_low_11
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_low_11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 180 - 337
Target Start/End: Complemental strand, 19397967 - 19397810
Alignment:
| Q |
180 |
gcgaactcaggacaacacaacaaattaacaaaaacctggtatagaaatgtaaaataaataaaacaggaacaaagtgagagttcgattatggtaaaagtga |
279 |
Q |
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| T |
19397967 |
gcgaactcaagacaacacaacaaattaacaaaaatctggtatagaaatgtaaaaaaaatgaaacaggaacaaagtgagagttcgattatggtaaaagtga |
19397868 |
T |
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| Q |
280 |
agatttgttacttgaaaagttaatagtagagtgttatgaaaaatgtaaagtaaattat |
337 |
Q |
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| T |
19397867 |
agagttcttacttgaaaagttaatagtagagtgttatgagaaatgtaaagtaaattat |
19397810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 19398136 - 19398014
Alignment:
| Q |
9 |
accagagatattttaaaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttatataatttttagtataatgagatctgataaacaaattaaac |
108 |
Q |
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| T |
19398136 |
accagagacattttaaaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttgtatagtttttagtataacgagatctgataaacaaattaaac |
19398037 |
T |
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| Q |
109 |
acacaaacgcatggtaaacagag |
131 |
Q |
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| T |
19398036 |
acacaaacgcatggtaaacagag |
19398014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 19398380 - 19398333
Alignment:
| Q |
24 |
aaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttatata |
71 |
Q |
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| T |
19398380 |
aaacagaaacatgtgtaaaagtgtttaaagaaatgaaatgtttatata |
19398333 |
T |
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