View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_low_13 (Length: 258)
Name: NF4247_low_13
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 40094591 - 40094361
Alignment:
| Q |
17 |
aaaaacaagatttgatcgtggagttcggccaattgtgtatacatctacggcagcaaagaggttacatattactgcttgtgtttaaatactatgagttgat |
116 |
Q |
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| T |
40094591 |
aaaaacaagatttgatcgcggagttcggccaattgtgtatacatctacggcagcaaagaggttacatattactacctgtgtttaaatactatgagttgat |
40094492 |
T |
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| Q |
117 |
tagtttattttctattattctcaccagctcaagcaacctactcacatataagtaaactatgagtcatactcaacataaagtgaagcataacaaattagaa |
216 |
Q |
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| T |
40094491 |
tagtttattttctattattctcaccaactcaagcaacctactcacatataattaaactaagagtcatactcaacataaagtgaaccataacaaattagaa |
40094392 |
T |
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| Q |
217 |
agggaacaggaatccagataaacaccttctt |
247 |
Q |
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| T |
40094391 |
agggaacatgaatccagataaacaccttctt |
40094361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 40082263 - 40082164
Alignment:
| Q |
77 |
gttacatattactgcttgtgtttaaatactatgagttgattagtttattttctattattctcaccagctcaagcaacctactcacatataagtaaactat |
176 |
Q |
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| T |
40082263 |
gttacatattactgcttgtgtttaaatacaattaattggttagttgattttctattattctgatcagctcaagcaacctactcacatatcagtaaactat |
40082164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 40063782 - 40063729
Alignment:
| Q |
194 |
aagtgaagcataacaaattagaaagggaacaggaatccagataaacaccttctt |
247 |
Q |
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| T |
40063782 |
aagtgaaacataacaaattagcaagggaacaagaattcagataaacaccttctt |
40063729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 40082130 - 40082079
Alignment:
| Q |
196 |
gtgaagcataacaaattagaaagggaacaggaatccagataaacaccttctt |
247 |
Q |
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||||| ||||||||||||| |||||||||||| | ||||||||||||||||| |
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| T |
40082130 |
gtgaaacataacaaattagtaagggaacaggagttcagataaacaccttctt |
40082079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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