View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4247_low_7 (Length: 445)
Name: NF4247_low_7
Description: NF4247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4247_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 41686068 - 41686489
Alignment:
| Q |
6 |
tggacatcatcacacactatacttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactacaacttaata |
105 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41686068 |
tggacattatcacacagtatacttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactacaacttaata |
41686167 |
T |
|
| Q |
106 |
acaaagaggaaatcacatttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacagga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41686168 |
acaaagaggaaatcacatttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacagga |
41686267 |
T |
|
| Q |
206 |
ttggaaaaaatgcatagtttataggaaccataagagatacatgcagaatttttatacctgatgatgattcaccttgagcatccttcaactttctcagctc |
305 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
41686268 |
ttggaaaaaatgcatag-ttataggaatcataagagatacatgcagaatttttatacctgatgatgattcatctggagcatccttcaactttctcagctc |
41686366 |
T |
|
| Q |
306 |
acgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttccttaacttccttcaacaatttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41686367 |
acgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttccttaacttccttcaacaatttt |
41686466 |
T |
|
| Q |
406 |
tcataattattttgtgctcttat |
428 |
Q |
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||||||||||||||||||||||| |
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| T |
41686467 |
tcataattattttgtgctcttat |
41686489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 286 - 426
Target Start/End: Original strand, 41708728 - 41708865
Alignment:
| Q |
286 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
385 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||| | || | ||||| || |
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| T |
41708728 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgtttt---ct |
41708824 |
T |
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| Q |
386 |
taacttccttcaacaatttttcataattattttgtgctctt |
426 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||| |
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| T |
41708825 |
taacttccttcaataacttttcataattattttgtgctctt |
41708865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 286 - 426
Target Start/End: Original strand, 41717800 - 41717937
Alignment:
| Q |
286 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
385 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||| | || | ||||| || |
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| T |
41717800 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgtttt---ct |
41717896 |
T |
|
| Q |
386 |
taacttccttcaacaatttttcataattattttgtgctctt |
426 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||| |
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| T |
41717897 |
taacttccttcaataacttttcataattattttgtgctctt |
41717937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 41659357 - 41659480
Alignment:
| Q |
288 |
cttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcctta |
387 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||| ||||||||||| ||| | ||||||||||| |||| |
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| T |
41659357 |
cttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctccttcaactaaactagtttt---ctta |
41659453 |
T |
|
| Q |
388 |
acttccttcaacaatttttcataatta |
414 |
Q |
| |
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||||||| ||||||| ||||||||||| |
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| T |
41659454 |
acttcctccaacaatgtttcataatta |
41659480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 41659168 - 41659330
Alignment:
| Q |
122 |
atttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacaggattggaaaaaatgcata |
221 |
Q |
| |
|
||||||||| |||||||||| ||| ||||| | ||||||||||||| |||||||| ||| || || |||||||| ||| |||| |||| ||||||| |
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| T |
41659168 |
atttccatgccaagctatctaaaaaactacacgagcatttatccgatcaccacttgtattgaattcgatatttataaagcagcattgtaaaa-atgcata |
41659266 |
T |
|
| Q |
222 |
gtttataggaaccataagagatacatgcagaatttttatacctgatgatgattcaccttgagca |
285 |
Q |
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||||||||||| |||| ||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
41659267 |
gtttataggaatcataggagatacatgcagaactctcatacctgatgatgattcaccttgagca |
41659330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 41687982 - 41687845
Alignment:
| Q |
289 |
ttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttccttaa |
388 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||| ||||||||| ||| ||| ||| ||||||| ||| |||||||||||||| || | |
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| T |
41687982 |
ttcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttttgtttga |
41687883 |
T |
|
| Q |
389 |
cttccttcaacaatttttcataattattttgtgctctt |
426 |
Q |
| |
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|||||||||||||| ||||||||| | |||||||||| |
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| T |
41687882 |
cttccttcaacaatgcttcataattttgttgtgctctt |
41687845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 41659005 - 41659072
Alignment:
| Q |
28 |
ttcattcaaatcaacttgatatacaaatttatggtacaactacatccccttttgtacgcaaaatactac |
96 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| |||||||||||||||| || ||||||||||| |
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| T |
41659005 |
ttcattcaaatcaa-ttgatatataaattcatggtataactacatccccttttatagacaaaatactac |
41659072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 14682512 - 14682473
Alignment:
| Q |
384 |
cttaacttccttcaacaatttttcataattattttgtgct |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14682512 |
cttaacttccttcaacaatttttcataattattctgtgct |
14682473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 41504162 - 41504192
Alignment:
| Q |
309 |
aacttctaactccaattcactgttcttcttt |
339 |
Q |
| |
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| T |
41504162 |
aacttctaactccaattcactgttcttcttt |
41504192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 41469092 - 41469124
Alignment:
| Q |
258 |
tatacctgatgatgattcaccttgagcatcctt |
290 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
41469092 |
tatacctgatgatgatgcaccttgagcatcctt |
41469124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 2439283 - 2439246
Alignment:
| Q |
236 |
taagagatacatgcagaatttttatacctgatgatgat |
273 |
Q |
| |
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| T |
2439283 |
taagagatacatacagaattttcatacctgatgatgat |
2439246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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