View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4248_high_10 (Length: 250)

Name: NF4248_high_10
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4248_high_10
NF4248_high_10
[»] chr8 (2 HSPs)
chr8 (1-238)||(30344253-30344487)
chr8 (91-238)||(24848015-24848161)
[»] chr6 (5 HSPs)
chr6 (1-238)||(18985290-18985524)
chr6 (15-181)||(11682650-11682814)
chr6 (14-135)||(22978631-22978753)
chr6 (14-135)||(23809650-23809772)
chr6 (14-135)||(2627958-2628080)
[»] chr5 (3 HSPs)
chr5 (1-238)||(23919993-23920227)
chr5 (133-238)||(39952562-39952668)
chr5 (73-135)||(1190761-1190823)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-238)||(12621-12839)
[»] chr7 (3 HSPs)
chr7 (11-110)||(33097948-33098047)
chr7 (98-238)||(25350604-25350743)
chr7 (98-238)||(25356298-25356437)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30344253 - 30344487
Alignment:
Q  1 attgtatgccggcatgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaacct 100  Q
    |||||| || |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  30344253 attgtacgctggcatgtatattttgtataatatttcgatgacaat--gttttgaatgtggtttggatttagtaatccaacccttttttggtaaccaacct 30344350  T
Q  101 taaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccatgtc 200  Q
    ||||||||||||||||||||||  | ||||  |||||||||| || | ||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  30344351 taaattggttgtacactacatgacaacatc--tatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtc 30344448  T
Q  201 ttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    ||||||||||||| ||||| |||||||||||| ||||||    
T  30344449 ttagaccatgcatcacaaatattcggattatgtgacctt 30344487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 24848161 - 24848015
Alignment:
Q  91 taatcaaccttaaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatctttt 190  Q
    ||||||||||| ||||||||||||||||||||| |||||||  |||||| || |||| ||| |||||||||||||||||||  ||||||||  ||||||     
T  24848161 taatcaaccttgaattggttgtacactacatggcagcatct--atatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttg 24848064  T
Q  191 atgccatgtcttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    |||  ||| ||||||||||||||   ||| |||||||||||||||||||    
T  24848063 atgttatgccttagaccatgcatcgtaaatattcggattatgcgacctt 24848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18985524 - 18985290
Alignment:
Q  1 attgtatgccggcatgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaacct 100  Q
    |||||| || |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  18985524 attgtacgctggcatgtatattttgtataatatttcgatgacaat--gttttgaatgtggtttggatttagtaatccaacccttttttggtaaccaacct 18985427  T
Q  101 taaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccatgtc 200  Q
    |||||||||| |||||||||||  | ||||  |||||||||| || | ||||||||||| | |||||||||||||||||||| |||||| ||||||||||    
T  18985426 taaattggttatacactacatgacaacatc--tatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtc 18985329  T
Q  201 ttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    ||||||||||||| ||||| |||||||||||| ||||||    
T  18985328 ttagaccatgcatcacaaatattcggattatgtgacctt 18985290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 11682814 - 11682650
Alignment:
Q  15 tgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaaccttaaattggttgtac 114  Q
    |||||||||||||||||||||| | |||||| |||||  ||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||      
T  11682814 tgtatattttgtataatatttcaatgacaatgtgtttgaaatgtggtttggatttaataatccaaccctttttttataatcaaccttaaataggttgttg 11682715  T
Q  115 actacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatg 181  Q
     |||||||| | ||||  ||||| | || |||| ||||||||||||| |||||||||| || |||||    
T  11682714 gctacatggcatcatc--tatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 22978753 - 22978631
Alignment:
Q  14 atgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcg-taatcaaccttaaattggttgt 112  Q
    ||||||| ||||||||||||||||| ||| || ||||   | | |||||||||| |||||||||||||||||||| | ||||||| ||||||| |||| |    
T  22978753 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatccaaccctttttttgataatcaaacttaaataggtttt 22978654  T
Q  113 acactacatggtagcatctatat 135  Q
      |||| || | |||||||||||    
T  22978653 tgactatatcgcagcatctatat 22978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 23809650 - 23809772
Alignment:
Q  14 atgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcg-taatcaaccttaaattggttgt 112  Q
    ||||||| ||||||||||||||||| ||| || ||||   | | |||||||||| |||||||||||||||||||| | ||||||| ||||||| |||| |    
T  23809650 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatccaaccctttttttgataatcaaacttaaataggtttt 23809749  T
Q  113 acactacatggtagcatctatat 135  Q
      |||| || | |||||||||||    
T  23809750 tgactatatcgcagcatctatat 23809772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 2628080 - 2627958
Alignment:
Q  14 atgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcg-taatcaaccttaaattggttgt 112  Q
    ||||||| ||||||||||||||||| |||  | ||||   | | |||||||||| |||||||||||||||||||| | ||||||| ||||||| |||| |    
T  2628080 atgtataatttgtataatatttcgatgactgtgtgttgaaattatggtttggatatagtaatccaaccctttttttgataatcaaacttaaataggtttt 2627981  T
Q  113 acactacatggtagcatctatat 135  Q
      |||| || | |||||||||||    
T  2627980 tgactatatcgcagcatctatat 2627958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 23919993 - 23920227
Alignment:
Q  1 attgtatgccggcatgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaacct 100  Q
    |||||| || |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  23919993 attgtacgctggcatgtatattttgtataatatttcgatgacaat--gttttgaatgtggtttggatttagtaatccaacccttttttggtaaccaacct 23920090  T
Q  101 taaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccatgtc 200  Q
    |||||||||| |||||||||||  | ||||  |||||||||| || | ||||||||||| | |||||||||||||||||||| |||||| ||||||||||    
T  23920091 taaattggttatacactacatgacaacatc--tatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtc 23920188  T
Q  201 ttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    ||||||||||||| ||||| |||||||||||| ||||||    
T  23920189 ttagaccatgcatcacaaatattcggattatgtgacctt 23920227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 39952562 - 39952668
Alignment:
Q  133 tatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccatgtcttagaccatgcattacaaa-attcggattatg 231  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||| ||||||||||||    
T  39952562 tatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggattatg 39952661  T
Q  232 cgacctt 238  Q
    |||||||    
T  39952662 cgacctt 39952668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 1190823 - 1190761
Alignment:
Q  73 aatccaacccttttttcgtaatcaaccttaaattggttgtacactacatggtagcatctatat 135  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1190823 aatctaacccttttttggtaatcaaccttaaattggttgtacactacatgatagcatctatat 1190761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12621 - 12839
Alignment:
Q  1 attgtatgccggcatgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaacct 100  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||                  |    
T  12621 attgtatgctggcatgtatattttgtataatatttcgatgacaatatgtgttgaatgtcgtttggatttagtaatccaacc------------------t 12702  T
Q  101 taaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccatgtc 200  Q
    ||||||||||||||||||||||| | |||||| ||  ||||| |||| ||||||||||||||||||||||| |||||||||  ||||||||||||||| |    
T  12703 taaattggttgtacactacatggcaacatctacat--ttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgcc 12800  T
Q  201 ttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    ||||| ||||||| ||||| |||||||||||||||||||    
T  12801 ttagatcatgcatcacaaatattcggattatgcgacctt 12839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 33098047 - 33097948
Alignment:
Q  11 ggcatgtatattttgtataatatttcgaggacaatatgttttgaatgtggtttggatttagtaatccaacccttttttcgtaatcaaccttaaattggtt 110  Q
    |||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  33098047 ggcatgtatattttgtataatatttcaatgacaatacgttttaaatgtggtttggatttagtaatccaacccatttttgctaatcaaccttaaattggtt 33097948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 25350743 - 25350604
Alignment:
Q  98 ccttaaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccat 197  Q
    |||||||||||||||||||||||||  | |||||||||  || || || | |||||||| |||||||| ||||| |||||||||  || ||||||| |||    
T  25350743 ccttaaattggttgtacactacatgacatcatctatat--ttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcat 25350646  T
Q  198 gtcttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    | |||||||||||||| ||||| |||||||||||||| ||||    
T  25350645 gccttagaccatgcatcacaaatattcggattatgcgtcctt 25350604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 25356437 - 25356298
Alignment:
Q  98 ccttaaattggttgtacactacatggtagcatctatatatttctgatgcaatacattatgtatgtaatgacaataattgttatgccatcttttatgccat 197  Q
    |||||||||||||||||||||||||  | |||||||||  || || || | |||||||| |||||||| ||||| |||||||||  || ||||||| |||    
T  25356437 ccttaaattggttgtacactacatgacatcatctatat--ttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcat 25356340  T
Q  198 gtcttagaccatgcattacaaa-attcggattatgcgacctt 238  Q
    | |||||||||||||| ||||| |||||||||||||| ||||    
T  25356339 gccttagaccatgcatcacaaatattcggattatgcgtcctt 25356298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University