View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_high_2 (Length: 622)
Name: NF4248_high_2
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 81 - 605
Target Start/End: Original strand, 2464924 - 2465446
Alignment:
| Q |
81 |
gttatgctgaagtggtatgaaactagggaagtccactacataccacgcccagactaagaataaacaaagattgtgaaaaagggcatttaacgatgtttga |
180 |
Q |
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| T |
2464924 |
gttatgctgaagtggtatgaaactagggaagtccaccacataccacgcccagactaagaataaacaaagactgtgaaaa-gggcatttaacgatgtttga |
2465022 |
T |
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| Q |
181 |
gatgttgtgtttataacagaagaaatcaatggagaaaatttttacactctagagtggcactaaaacactaccactcaaataaaggctgtcgccaggtctg |
280 |
Q |
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| T |
2465023 |
gatgttgtgtttataacagaagaaatcaatggagaaattttttacactccagagtgccactaaaac-----cactcaaataaaggctgtcgccaggtctg |
2465117 |
T |
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| Q |
281 |
gacacaactaacaagcttgctctgctacaatgatatcttcaagtttaaaccatccattggagatgcggcattttagttagagctgccgtccacaagcaga |
380 |
Q |
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| T |
2465118 |
gacacaactaacaagcttgccctgctacaatgatatcttcaagtttaaaccacccattggagatgtggcattggagttagagctgccgtcctcaagcaga |
2465217 |
T |
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| Q |
381 |
actaaccccattttcatgtttttaagatcatgttatgcctctgtcacagccgcgctcgacttactaaaatgagaactataccttagatattttactgcat |
480 |
Q |
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| T |
2465218 |
attaagctcattttcatgtttttaagatcatgttatgcctctgtcacagccgcgctcgacttactaaaatgagaactataccttagatattttactgcat |
2465317 |
T |
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| Q |
481 |
attcctgcctaaactaaaatataatcatccagaagctttcc----ttatatgacaactgtactttctgttatgattaatcaagagtttgttagaagaggt |
576 |
Q |
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| T |
2465318 |
attcctgcctaaactaaaatataatcatccagaagctttccttaattatatgacaactgtactttctgttatgattaatcaagagtttgttagaagaggt |
2465417 |
T |
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| Q |
577 |
tgttagaatcatatttggattgcagattt |
605 |
Q |
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| T |
2465418 |
tgttagaatcatatttggattgtagattt |
2465446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 2463221 - 2463283
Alignment:
| Q |
11 |
taattctcaaattcattggttcaaaaaatttataatgttggcctcaaatcttgaaccatacca |
73 |
Q |
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| T |
2463221 |
taattctcaaattcattggttcaaaaaatttataatgttggcctcaaatcttgaaccatacca |
2463283 |
T |
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