View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_high_4 (Length: 393)
Name: NF4248_high_4
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 49274828 - 49275204
Alignment:
| Q |
17 |
cagttcatattttgcacatcttgcaatgattttggaatcaataaggaaacttcttttacaccatcatatgtcatatctcttgattccttttaattgaaaa |
116 |
Q |
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| T |
49274828 |
cagttcatattttgcacatcttgcaatgattttggaatcaataaggaaacttcttttacaccatcatatgtcatatctcttgattccttttaattgaaaa |
49274927 |
T |
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| Q |
117 |
accaagaccggcacaaacgtagaaacacaaattatagcatacatctaaaccaacttacaaatatcaggatggctgaaccaatacaccatatatagcgaat |
216 |
Q |
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| T |
49274928 |
accaagaccggcacaaacgtagaaacacaaattatagcatacatctaaaccaacttacaaatatcaggatggctgaaccaatacaccatatatagcgaat |
49275027 |
T |
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| Q |
217 |
tcaattaatggaaagtgaaaagttcaatggccttatggccctaacttaggacagttaaaaatattcaaaaacaggtaaaaggctgaattttcttcaatca |
316 |
Q |
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| T |
49275028 |
tcaattaatggaaagtgaaaagttcaatgggcttatggccctaacttaggacagttaaaaatattcaaaaacaggtacaaggctgaattttcttcaatca |
49275127 |
T |
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| Q |
317 |
tttagtcacaaagctgcaagtaagatggttatcgaagtttgcaaattttacttatgagtttaaagctacatattcat |
393 |
Q |
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| T |
49275128 |
tttagtcacaaagctgcaagtaagatggttatcgaagtttgcaaattttacttatgagtttaaagctacatattcat |
49275204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 32133095 - 32133231
Alignment:
| Q |
20 |
ttcatattttgcacatcttgcaatgattttggaatcaataaggaaacttcttttacaccatcatatgtcatatctcttgattccttttaattgaaaaacc |
119 |
Q |
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| T |
32133095 |
ttcatattgtgcacatcttgtaatgattttggaatcgataaggaagcattttctacaccatcatatgtcatatctcttgatttc-tgtaattgaaaatcc |
32133193 |
T |
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| Q |
120 |
aagaccggcacaaacgtagaaacacaaattatagcata |
157 |
Q |
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| T |
32133194 |
cagacctgcacaaacgtacaaagactaattataacata |
32133231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 32133270 - 32133337
Alignment:
| Q |
217 |
tcaattaatggaaagtgaaaagttcaatggcctt--atggccctaactt-aggacagttaaaaatatt |
281 |
Q |
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| T |
32133270 |
tcaattaatgcagagtgaaaaatgcaatggccttaaatggccctaacttaaggacaggtaaaaatatt |
32133337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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