View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_high_5 (Length: 343)
Name: NF4248_high_5
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 2122577 - 2122261
Alignment:
| Q |
7 |
aatatacagtatcgaaaataggtttggaaatgtacctgcatttttccttccnnnnnnnnncatgtacctgcattttcattttgtacaagatcgatcgtca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2122577 |
aatatacagtatcgaaaataggtttggaaatgtacctgcatttttccttccaaaaaaaaacatgtacctgcattttcattttgtacaagatcgatggtca |
2122478 |
T |
|
| Q |
107 |
ccacacagtacacgagtgaccactttttccaaggttccataattccattgtacttatttgtaaagctgaattctgtggtctgaaactgatttgttcacct |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2122477 |
ccacaca-----cgagtgaccactttttccaaggttccataattccattgtacttatttgtaaagctgaattatgtggtctgaaactgatttgttcacct |
2122383 |
T |
|
| Q |
207 |
tctacgaaaaggacacac-accatgcccatttattttttacgtgacccacaacggtgatccgtgctagtgtatcaaaaatatcccagctctcaaatattt |
305 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122382 |
tctaagaaaaggacacaccaccatgcccatttattttttacgtgacccacaacggtgatccgtgctagtgtatcaaaaatatcccagctctcaaatattt |
2122283 |
T |
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| Q |
306 |
ccagtttagtttaagaacataa |
327 |
Q |
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|||||||||||||||||||||| |
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| T |
2122282 |
ccagtttagtttaagaacataa |
2122261 |
T |
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