View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_10 (Length: 292)
Name: NF4248_low_10
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 4570688 - 4570844
Alignment:
| Q |
1 |
tatatgggaatagcttctaaaacactttt-tgccaaagtcactttcccagcaaaagacaaatggttagctttccaagacacaagcttagaactaacttgt |
99 |
Q |
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| T |
4570688 |
tatatgggaatagcttctaaaacatttttttgccaaagtcactctcccagcaaaagacaaatggtcagctttccaagacacaagcttataactaacttgt |
4570787 |
T |
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| Q |
100 |
tctattacataacgataatcttctttcttaggagctttacctgtcaatggcacaccc |
156 |
Q |
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| T |
4570788 |
tctatgacataacgataatcttctttcttaggagctttacctgtcaatggcacaccc |
4570844 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 4570841 - 4570887
Alignment:
| Q |
189 |
acccgacaaatgaattaatctctccctagtggggcggttaacattct |
235 |
Q |
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| T |
4570841 |
acccgacaaatgaattaatctctccctagtggggcggttaacattct |
4570887 |
T |
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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 4570937 - 4570990
Alignment:
| Q |
229 |
acattctacaaaatttcccaagaatttcaataacacgattaatttgcatctctg |
282 |
Q |
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| T |
4570937 |
acattctacaaaaattcccaagaattttagtaacacaattaatttgcatctctg |
4570990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 9572737 - 9572935
Alignment:
| Q |
4 |
atgggaatagcttctaaaacactttttgccaaagtcactttcccagcaaaagacaaatggttagctttccaagacacaagcttagaactaa-cttgttct |
102 |
Q |
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| T |
9572737 |
atgggaatatctgctaaaacacttt--gccaaagtcaccctcccagcaaaagacaagtggttggctttccatgacatgagcttgaaaccaaacctgttca |
9572834 |
T |
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| Q |
103 |
attacataacgataatcttctttcttaggagctttacctgtcaatggcacacccaaatactttccaagag-tataagtttctctaaaacccgacaaatga |
201 |
Q |
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| T |
9572835 |
ataatatattgataatcctctttcttaggagctctacctgtcaacggaactccgagatactttccaagagaaatgagtttctctaaaacccaacaaatga |
9572934 |
T |
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