View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_11 (Length: 272)
Name: NF4248_low_11
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 9677252 - 9677493
Alignment:
| Q |
13 |
gagaaccgactctcaactaaatgcttacgatttattagtgacgaacaacacaaaagcttcaaatagaaaataaaatttgctctaaattaggttatgaaat |
112 |
Q |
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| T |
9677252 |
gagaaccgactctcaactaaatgcttactatttattagtgacgaacaacacaaaagcttcaaatagaaaataaaatttgctctaaattaggttatgaaat |
9677351 |
T |
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| Q |
113 |
aaaataaactaattgtttgtgaaggtagagatccattaattaatcaattaacacaaaataaaagcacagcatggatagcaatgaaaagagggacacaaac |
212 |
Q |
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| T |
9677352 |
aaaataaactaattgtttgtgaaggtagagatccattaattaatcaattaacacaaaataaaagcacagcatggatagcaatgaaaagagcgacacaaac |
9677451 |
T |
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| Q |
213 |
ataccttgtttatgaaatcaacagaagcgagagtggccttat |
254 |
Q |
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| T |
9677452 |
ataccttgtttatgaaatcaacagaagcgagagtggccttat |
9677493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 50328104 - 50328072
Alignment:
| Q |
88 |
tttgctctaaattaggttatgaaataaaataaa |
120 |
Q |
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| T |
50328104 |
tttgctctaaattaggttatgaaataaaataaa |
50328072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 50328218 - 50328189
Alignment:
| Q |
88 |
tttgctctaaattaggttatgaaataaaat |
117 |
Q |
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| T |
50328218 |
tttgctctaaattaggttatgaaataaaat |
50328189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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