View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_14 (Length: 265)
Name: NF4248_low_14
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 23632585 - 23632349
Alignment:
| Q |
11 |
catagggaatcacatgactcaagaattaacaaagatggcaaaagaggggtattatccattgtttgagacaaggagaaggaagggaagactcatgtacaga |
110 |
Q |
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| T |
23632585 |
catagggaatcaca--actcaagaattaacaaagatggcaaaagaggagtattatccattgtttgagacaaggagaaggaagggaagactcatgtacaga |
23632488 |
T |
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| Q |
111 |
gtattctctttctcattgttaataggaatttggtccatttgggtttacagattgagttacatacccaaagaagatggaaaatgggtttggattggattgc |
210 |
Q |
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| T |
23632487 |
gtattctctttctcattgttaataggaatttggtccatttgggtttacagattgagttacatacccaaagaagatggaaaatgggtttggattggattgc |
23632388 |
T |
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| Q |
211 |
tttgtgctgaattatggtttggtttttattggttccttc |
249 |
Q |
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| T |
23632387 |
tttgtgctgaattatggtttggtttttattggttccttc |
23632349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 23643680 - 23643446
Alignment:
| Q |
11 |
catagggaatcacatgactcaagaattaacaaagatggcaaaagaggggtattatccattgtttgagacaaggagaaggaagggaagactcatgtacaga |
110 |
Q |
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||||||||| |||| |||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
23643680 |
catagggaaacaca--actcaaaaattaagaaagatggggaaagaggagtattatccattgtttgagacaaggagagggaagggaagactcatgtacata |
23643583 |
T |
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| Q |
111 |
gtattctctttctcattgttaataggaatttggtccatttgggtttacagattgagttacatacccaaagaagatggaaaatgggtttggattggattgc |
210 |
Q |
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| T |
23643582 |
atattctctttctctttgtttgtaggaatttgctccatttgggtttatagagtgagttatatacccaaaaaagatggaaaatgggtttggattggattgc |
23643483 |
T |
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| Q |
211 |
tttgtgctgaattatggtttggtttttattggttcct |
247 |
Q |
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| T |
23643482 |
tttgtgctgaactatggtttggtttttattggttcct |
23643446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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