View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_15 (Length: 264)
Name: NF4248_low_15
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 49275205 - 49275457
Alignment:
| Q |
1 |
gtcttcttgatttggtacgtacttgcattagtacttgtcaattttataagaaaatttatagttgaattgatttaataattacatacaaaacatgannnnn |
100 |
Q |
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| T |
49275205 |
gtcttcttgatttggtacgtacttgcattagtacttgtcaattttataagaaaatttatagttgaactgatttaataattacatacaaaacatgattttt |
49275304 |
T |
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| Q |
101 |
nnnnagtttcaaattaaacatgtaactcactgaaatagtagttagaagcaaatgtacaatcaataatttactttcggtaaacttaaacactgctttacta |
200 |
Q |
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| T |
49275305 |
ttt-agtttcaaattaaacatgtaactcactgaaagagtagttataagcaaatgtacaatcaataatttactttcggtaaacttaaacactgctttacta |
49275403 |
T |
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| Q |
201 |
aaatcacaatttacaatgttaggaaagcagatgtttctcaaaggcacgtctctg |
254 |
Q |
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| T |
49275404 |
aaatcacaatttacaatgttaggaaagcagatgttcctcaaaggcacgtctctg |
49275457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 49278835 - 49278932
Alignment:
| Q |
151 |
aatgtacaatcaataatttactttcggtaaacttaaaca---ctgctttactaaa-----------atcacaatttacaatgttaggaaagcagatgt |
234 |
Q |
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| T |
49278835 |
aatgtacaatcaataatttactttcggtaaccttaaacagttctgctttaataaatattgattaaaatcacaatttacaatgttaggaaagcagatgt |
49278932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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