View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4248_low_19 (Length: 237)
Name: NF4248_low_19
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 22400542 - 22400412
Alignment:
| Q |
16 |
agagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatccttagagtctttacattggtcattattagtcttggtaattttctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22400542 |
agagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatcctaagagtctttacattggtcattattagtcttggtaattttctg |
22400443 |
T |
|
| Q |
116 |
aaggcctctgacatcaacatcttgttcctac |
146 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
22400442 |
aaagcctctgacatcaacatcttgttcctac |
22400412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 22965455 - 22965326
Alignment:
| Q |
17 |
gagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatccttagagtctttacattggtcattattagtcttggtaattttctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22965455 |
gagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatcctaagagtatttacattggtcattattagtcttggtaattttctga |
22965356 |
T |
|
| Q |
117 |
aggcctctgacatcaacatcttgttcctac |
146 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |
|
|
| T |
22965355 |
aagcctttgacatcaacatcttgttcctac |
22965326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 22791988 - 22791887
Alignment:
| Q |
16 |
agagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatccttagagtctttacattggtcattattagtcttggtaattttctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22791988 |
agagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaatacatcctaagagtctttacattggtcattattagtcttggtaattttctg |
22791889 |
T |
|
| Q |
116 |
aa |
117 |
Q |
| |
|
|| |
|
|
| T |
22791888 |
aa |
22791887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University