View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4248_low_2 (Length: 663)

Name: NF4248_low_2
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4248_low_2
NF4248_low_2
[»] chr3 (23 HSPs)
chr3 (25-651)||(47761000-47761625)
chr3 (140-265)||(24758896-24759021)
chr3 (140-265)||(24767893-24768018)
chr3 (140-265)||(24813120-24813245)
chr3 (140-265)||(24826993-24827118)
chr3 (145-265)||(37984844-37984964)
chr3 (145-256)||(53024811-53024921)
chr3 (145-265)||(31687629-31687750)
chr3 (140-265)||(33648255-33648380)
chr3 (311-398)||(13867399-13867487)
chr3 (145-265)||(17689428-17689548)
chr3 (147-265)||(19769654-19769772)
chr3 (165-291)||(32790915-32791041)
chr3 (309-391)||(52134598-52134681)
chr3 (319-400)||(3848147-3848229)
chr3 (145-222)||(24129220-24129297)
chr3 (343-398)||(11396747-11396803)
chr3 (184-265)||(12531306-12531388)
chr3 (165-262)||(11396607-11396704)
chr3 (212-265)||(50835520-50835573)
chr3 (212-265)||(50840280-50840333)
chr3 (322-370)||(12531396-12531444)
chr3 (343-393)||(28907579-28907630)
[»] chr7 (13 HSPs)
chr7 (197-400)||(11646703-11646907)
chr7 (197-400)||(13764791-13764995)
chr7 (145-265)||(26906675-26906795)
chr7 (145-265)||(43070290-43070410)
chr7 (311-393)||(7448981-7449064)
chr7 (145-265)||(14231971-14232092)
chr7 (184-392)||(44548370-44548578)
chr7 (145-241)||(48847147-48847243)
chr7 (145-240)||(1264695-1264790)
chr7 (309-391)||(6841381-6841464)
chr7 (351-399)||(39704319-39704368)
chr7 (335-398)||(39445824-39445888)
chr7 (224-332)||(35858425-35858532)
[»] chr4 (6 HSPs)
chr4 (145-279)||(24262549-24262683)
chr4 (145-265)||(29861375-29861495)
chr4 (341-398)||(41813488-41813546)
chr4 (173-291)||(17404837-17404955)
chr4 (302-392)||(21207392-21207483)
chr4 (343-400)||(17404766-17404824)
[»] chr6 (14 HSPs)
chr6 (225-382)||(10095337-10095495)
chr6 (197-392)||(27447068-27447264)
chr6 (145-265)||(21999272-21999392)
chr6 (316-399)||(19121424-19121508)
chr6 (145-265)||(31891390-31891510)
chr6 (309-399)||(30906235-30906326)
chr6 (165-265)||(22681779-22681879)
chr6 (337-399)||(8976996-8977059)
chr6 (336-398)||(33051359-33051422)
chr6 (304-400)||(233827-233924)
chr6 (339-391)||(2918380-2918433)
chr6 (335-399)||(3066429-3066494)
chr6 (335-393)||(33481843-33481903)
chr6 (343-398)||(4659056-4659112)
[»] chr2 (13 HSPs)
chr2 (207-398)||(2040163-2040351)
chr2 (145-265)||(23347888-23348008)
chr2 (145-265)||(18354215-18354335)
chr2 (145-265)||(12742735-12742855)
chr2 (145-233)||(30015554-30015642)
chr2 (170-299)||(30044966-30045098)
chr2 (170-299)||(30050129-30050261)
chr2 (170-299)||(30141173-30141305)
chr2 (145-233)||(30074651-30074739)
chr2 (248-360)||(30242783-30242895)
chr2 (302-392)||(1613194-1613285)
chr2 (165-262)||(9211537-9211634)
chr2 (335-390)||(925055-925111)
[»] scaffold0003 (2 HSPs)
scaffold0003 (197-392)||(40094-40290)
scaffold0003 (197-398)||(33478-33662)
[»] chr5 (11 HSPs)
chr5 (145-263)||(9044896-9045014)
chr5 (145-265)||(7472416-7472536)
chr5 (145-265)||(30442804-30442924)
chr5 (145-265)||(32871951-32872071)
chr5 (145-262)||(22002963-22003080)
chr5 (145-265)||(30441504-30441623)
chr5 (286-391)||(22004578-22004684)
chr5 (309-370)||(19081384-19081445)
chr5 (302-392)||(4734874-4734965)
chr5 (302-392)||(26836407-26836498)
chr5 (335-393)||(29656066-29656125)
[»] chr8 (15 HSPs)
chr8 (148-265)||(8163895-8164012)
chr8 (145-265)||(14672481-14672601)
chr8 (216-398)||(1848721-1848904)
chr8 (145-231)||(33686215-33686301)
chr8 (303-398)||(1849846-1849942)
chr8 (303-398)||(27671415-27671511)
chr8 (322-393)||(33199052-33199125)
chr8 (212-265)||(11730390-11730443)
chr8 (212-265)||(23740702-23740755)
chr8 (322-370)||(27535501-27535549)
chr8 (341-393)||(15610346-15610399)
chr8 (303-399)||(34345916-34346013)
chr8 (198-265)||(27535408-27535476)
chr8 (335-393)||(9374612-9374671)
chr8 (303-357)||(40398821-40398875)
[»] scaffold0045 (1 HSPs)
scaffold0045 (145-265)||(10222-10342)
[»] scaffold0035 (1 HSPs)
scaffold0035 (145-265)||(37044-37164)
[»] chr1 (8 HSPs)
chr1 (145-265)||(25226742-25226862)
chr1 (165-291)||(32437561-32437687)
chr1 (309-398)||(23597858-23597948)
chr1 (341-399)||(7604858-7604917)
chr1 (335-398)||(42773298-42773362)
chr1 (341-398)||(31768413-31768471)
chr1 (309-366)||(50992867-50992924)
chr1 (335-390)||(28237344-28237400)
[»] scaffold0318 (1 HSPs)
scaffold0318 (304-401)||(6493-6591)
[»] scaffold0096 (2 HSPs)
scaffold0096 (184-265)||(32509-32593)
scaffold0096 (322-370)||(32453-32501)
[»] scaffold0475 (1 HSPs)
scaffold0475 (343-398)||(6353-6409)


Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 25 - 651
Target Start/End: Complemental strand, 47761625 - 47761000
Alignment:
Q  25 gactagattaattaagtac-ttttcaaatatgtcaacaagggacacgaccacgttactgcattcttctataatgccgagtctgaatgttacgacgaaatt 123  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  47761625 gactagattaattaagtaccttttcaaatatgtcaacaagggacacgaccgcgttactgcattcttctataacaccgggtctgaatgttacgacgaaatt 47761526  T
Q  124 aagatgtattacgactacaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||  ||||||||||||    
T  47761525 aagatgtattacgactacaagtatatgttgcaatctcacgtgttacatcaagagatcgtctgaacatattatcaacggatgacaatagggattgtatcaa 47761426  T
Q  224 caccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattgaattgttttattttctat 323  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47761425 caccacttcaaatgtagtatacaaagaaatattccaaaatgtttgagcaactgttgtatgtcctaaaagatagtttcaattgaattgttttattttctat 47761326  T
Q  324 gtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagtaaagtcaagtattcaaaactatga 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47761325 gtaatggatcttattgcaatatattaacttctccattatttatgacccgaacggtagcacggataaaagttatagtaaagtcaagtattcaaaactatga 47761226  T
Q  423 caatgttatcattgttctttaatttcgttgnnnnnnncacccaacagttcccttgtaggggtatgaacgagtgacttgctcatgttgtcttgtatgaaat 522  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||    
T  47761225 caatgttatcattgttctttaatttcgttgtttttttcacccaacagttcccttgt----gtatgaacgagtgaattgctcatgttgtcttgtatgaaat 47761130  T
Q  523 acaacaagaatgagcaacgtgcaccccacaaagcaactacta-ccctcaatcatgcaaggannnnnnngacaaaagggctaaactacaaaaggctatgga 621  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  47761129 acaacaagaatgagcaacgtgcaccccacaaagcaactactacccctcaatcatgcaaggatttttttgacaaaagggctaaactacaaaaggctatgga 47761030  T
Q  622 tattaatgggccgcgcgtaattttgaccta 651  Q
    ||||||||||||||||||||||||||||||    
T  47761029 tattaatgggccgcgcgtaattttgaccta 47761000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 24759021 - 24758896
Alignment:
Q  140 acaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgta 239  Q
    |||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||| ||| ||||  |||||||| ||||||||||||||||||    
T  24759021 acaactatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgta 24758922  T
Q  240 gtatacaaagagatattccaaaatgt 265  Q
    || || || ||||||||  |||||||    
T  24758921 gtttataaggagatatttgaaaatgt 24758896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 24768018 - 24767893
Alignment:
Q  140 acaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgta 239  Q
    |||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||| ||| ||||  |||||||| ||||||||||||||||||    
T  24768018 acaactatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgta 24767919  T
Q  240 gtatacaaagagatattccaaaatgt 265  Q
    || || || ||||||||  |||||||    
T  24767918 gtttataaggagatatttgaaaatgt 24767893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 24813120 - 24813245
Alignment:
Q  140 acaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgta 239  Q
    |||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||| ||| ||||  |||||||| ||||||||||||||||||    
T  24813120 acaactatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgta 24813219  T
Q  240 gtatacaaagagatattccaaaatgt 265  Q
    || || || ||||||||  |||||||    
T  24813220 gtttataaggagatatttgaaaatgt 24813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 24826993 - 24827118
Alignment:
Q  140 acaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgta 239  Q
    |||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||| ||| ||||  |||||||| ||||||||||||||||||    
T  24826993 acaactatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttcaaatgta 24827092  T
Q  240 gtatacaaagagatattccaaaatgt 265  Q
    || || || ||||||||  |||||||    
T  24827093 gtttataaggagatatttgaaaatgt 24827118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 37984844 - 37984964
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| |||  | |||||||||||| ||||||||| | || ||||||||||| |||||||||||||||||| ||    
T  37984844 tatatgttgcaatatcacgtgttacatcaagggatgatctgaagatattattaacggatgacattggggattgtatcagcaccacttcaaatgtagttta 37984943  T
Q  245 caaagagatattccaaaatgt 265  Q
     ||  |||||||| |||||||    
T  37984944 taagaagatattcgaaaatgt 37984964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 53024921 - 53024811
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||||||||| |||| |||| ||||  |||||||| |||||||||||||||||||| ||    
T  53024921 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattat-aacgaatgacaatggagattgtattaacaccacttcaaatgtagttta 53024823  T
Q  245 caaagagatatt 256  Q
     || ||||||||    
T  53024822 taaggagatatt 53024811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 31687629 - 31687750
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagat-attatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtat 243  Q
    ||||||||||||| ||||||||||||||||| ||| || ||||||| ||||| |||  |||| |||| ||||||||||| |||||||||||||||||| |    
T  31687629 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagattattattaacatatgacaatggggattgtatcagcaccacttcaaatgtagttt 31687728  T
Q  244 acaaagagatattccaaaatgt 265  Q
    | || || |||||| |||||||    
T  31687729 ataaggaaatattcgaaaatgt 31687750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 33648380 - 33648255
Alignment:
Q  140 acaagtatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgta 239  Q
    |||| ||||||||||||| |||| |||||| ||||| ||| || |||||||||||| ||||||||| |||| ||||  ||| ||||||||||||||||||    
T  33648380 acaactatatgttgcaatatcacatgttacgtcaagggatggtctgaagatattattaacggatgacaatggggataatattaacaccacttcaaatgta 33648281  T
Q  240 gtatacaaagagatattccaaaatgt 265  Q
    || || || ||||||||  |||||||    
T  33648280 gtttataaggagatatttgaaaatgt 33648255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 13867487 - 13867399
Alignment:
Q  311 ttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||| ||||    
T  13867487 tttttttttttatgtaatggatcttattgcaatatattagcttctccattgtttatgacccgagcggtagcacgagtaaaagttctagt 13867399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 17689428 - 17689548
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| |||| |||||||||||| ||| || |||||||||||| ||| ||||| |||| ||||| ||||| ||||| |||||||||||| ||    
T  17689428 tatatgttgcaatatcacatgttacatcaagggatggtctgaagatattattaacagatgacaatggggattatatcagcaccatttcaaatgtagttta 17689527  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  17689528 taaggaaatattcgaaaatgt 17689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 19769654 - 19769772
Alignment:
Q  147 tatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtataca 246  Q
    ||||||||||| |||||||||||| |||| |||  | | |||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||| || |    
T  19769654 tatgttgcaatatcacgtgttacaacaagggataatctaaagatattattaacggatgacaatggagattgtatcagcaccacttcaaatgtagtttata 19769753  T
Q  247 aagagatattccaaaatgt 265  Q
    | ||||||||  |||||||    
T  19769754 aggagatatttgaaaatgt 19769772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 32791041 - 32790915
Alignment:
Q  165 gttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatg 264  Q
    ||||||| ||||||| || |||||||||||| |||| |||| |||||||| ||||   ||||||||||||||||||| || |||||||||||  |||||     
T  32791041 gttacattaagagatggtttgaagatattattaacgcatgacaatgaggagtgtaattacaccacttcaaatgtagtgtagaaagagatatttaaaaata 32790942  T
Q  265 tttgagcaactgttgcatgtcctaaaa 291  Q
    | ||| || |||||| |||||||||||    
T  32790941 tgtgaacacctgttgtatgtcctaaaa 32790915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 52134598 - 52134681
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaag 391  Q
    |||||| || ||||| |||| |||| ||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  52134598 tgttttcttatctatataattgatcatattgcaatatattagcttctccattgtttatgacccgggcggtagcatgggtaaaag 52134681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 3848147 - 3848229
Alignment:
Q  319 tctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagtaa 400  Q
    |||| |||||||||||||||||| |||||||  |||||| || ||||||| |||| |||||||||||||||||||| ||||||    
T  3848147 tctacgtaatggatcttattgcactatattagtttctcctttgtttatgacccggacggtagcacgggtaaaagttctagtaa 3848229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 24129297 - 24129220
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatca 222  Q
    ||||||||||||| | ||||||||||||||| ||| || |||| ||||||||||| ||||| |||| |||||||||||    
T  24129297 tatatgttgcaatattacgtgttacatcaagggatggtctgaatatattatcaacagatgacaatggggattgtatca 24129220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 11396747 - 11396803
Alignment:
Q  343 tatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagttatagt 398  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  11396747 tatattaacttctccattgtttatgacccgggcggtagcacgggtaaaagttctagt 11396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 12531388 - 12531306
Alignment:
Q  184 tgaagatattatcaacggatgataatgaggattgtatcaacaccac-ttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||  ||||||||| |||| ||||||||||| |||||| |||||||||||| || || ||||||||| |||||||    
T  12531388 tgaagatattactaacggatgacaatggggattgtatcagcaccactttcaaatgtagtttataaggagatattcgaaaatgt 12531306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 11396607 - 11396704
Alignment:
Q  165 gttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaa 262  Q
    ||||||| ||||||| || |||||||||||| |||| |||| |||| ||| ||||   ||||||||||||| ||||| || |||||||||||| ||||    
T  11396607 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaacgtagtgtataaagagatattcgaaaa 11396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 50835520 - 50835573
Alignment:
Q  212 ggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||||||||||| |||||||||||| |||||| | |||||||||||    
T  50835520 ggattgtatcaacaccacttgaaatgtagtatataaagaggtgttccaaaatgt 50835573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 50840333 - 50840280
Alignment:
Q  212 ggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||||||||||| |||||||||||| |||||| | |||||||||||    
T  50840333 ggattgtatcaacaccacttgaaatgtagtatataaagaggtgttccaaaatgt 50840280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 12531444 - 12531396
Alignment:
Q  322 atgtaatggatcttattgcaatatattaacttctccattatttatgacc 370  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  12531444 atgtaatggatcatattgcaatatattagcttctccattgtttatgacc 12531396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 28907579 - 28907630
Alignment:
Q  343 tatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagtt 393  Q
    ||||||| |||||||||| ||||||||| |||| ||||||||||||||||||    
T  28907579 tatattaccttctccattgtttatgacccgggcagtagcacgggtaaaagtt 28907630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 197 - 400
Target Start/End: Complemental strand, 11646907 - 11646703
Alignment:
Q  197 aacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatag 296  Q
    ||||||||  ||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||||| ||| ||||||| || |    
T  11646907 aacggatgccaatgacgattgtatcaaaaccacttcaaatgtagtgtataaagagatatttcaaaatgtgtgagcaactgttgtatgacctaaaatattg 11646808  T
Q  297 tttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttat 395  Q
    |||   ||||||| |||| || ||||||||| ||||  |||||||||||||||  ||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  11646807 tttatgttgaattattttcttatctatgtaaaggataatattgcaatatattagtttctccattgtttatgacccgagcggtagcacgggtaaaagttct 11646708  T
Q  396 agtaa 400  Q
    |||||    
T  11646707 agtaa 11646703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 400
Target Start/End: Original strand, 13764791 - 13764995
Alignment:
Q  197 aacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatag 296  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||| || ||||| |||||||||||||| |||  || ||||  ||||||||||| || |    
T  13764791 aacggatgacaatgaagattatatcaacaccacttcaaatgtagtgtataaagatatattccaaaatgtgtgaataattgttatatgtcctaaaatattg 13764890  T
Q  297 tttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgac-cgggcggtagcacgggtaaaagttat 395  Q
     ||   |||||||||||| || ||||| |||| |||| ||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||| |    
T  13764891 attatgttgaattgttttcttatctatataatagatcatattgcaatatattagcttttccattgtttatgactcgggcggtagcacgggtaaaagttct 13764990  T
Q  396 agtaa 400  Q
    |||||    
T  13764991 agtaa 13764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 26906795 - 26906675
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||| ||||  |||||||||||||||| |||||||||||| ||    
T  26906795 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggagattgtatcaacaccatttcaaatgtagttta 26906696  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  26906695 taaggagatattcgaaaatgt 26906675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 43070410 - 43070290
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||||||| ||    
T  43070410 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttta 43070311  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  43070310 taaggagatattcgaaaatgt 43070290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 7449064 - 7448981
Alignment:
Q  311 ttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgac-cgggcggtagcacgggtaaaagtt 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  7449064 ttttttttcctatgtaatggatcttattgcaatatattaacttctccattgtttatgactcgggcggtagcacggataaaagtt 7448981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 14231971 - 14232092
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagag-atcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtat 243  Q
    ||||||||||||| ||||||||||||||||| | || || |||||||||||| ||||||||| |||| ||||||||| |  ||||||||||||||||| |    
T  14231971 tatatgttgcaatatcacgtgttacatcaaggggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgtagttt 14232070  T
Q  244 acaaagagatattccaaaatgt 265  Q
    | || ||||||||| |||||||    
T  14232071 ataaggagatattcgaaaatgt 14232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 184 - 392
Target Start/End: Original strand, 44548370 - 44548578
Alignment:
Q  184 tgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaa-tgtagtatacaaagagatattccaaaatgtttgagcaactgttgcat 282  Q
    |||||||||||| |||||||||  ||||| |||||||  ||||||||||||| | |||| |  |||||||||||| ||||||| | | || | |||| ||    
T  44548370 tgaagatattattaacggatgacgatgag-attgtattgacaccacttcaaaatttagtgtttaaagagatattctaaaatgtgtaaacacccgttgtat 44548468  T
Q  283 gtcctaaaagatagtttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagca 381  Q
    || |||||| || |||    |||||||||||| || ||||| ||||| ||| | |||||||||||||| ||||||||  ||||||| |||||||||||||    
T  44548469 gttctaaaatattgttgatgttgaattgtttttttatctatataatgaatcattttgcaatatattaa-ttctccatagtttatgacccgggcggtagca 44548567  T
Q  382 cgggtaaaagt 392  Q
    |||||||||||    
T  44548568 cgggtaaaagt 44548578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 48847243 - 48847147
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagt 241  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||||||||||| |||  |||| |||||||||||||| | ||||||||||||||||||    
T  48847243 tatatgttgcaatatcatgtgttacatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttcaaatgtagt 48847147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 1264695 - 1264790
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtag 240  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||||||||||| |||  |||| |||||||||||||| | |||||||||||||||||    
T  1264695 tatatgttgcaatatcatgtgttacatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttcaaatgtag 1264790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 6841381 - 6841464
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaag 391  Q
    |||||| || |||||||||| |||| || || ||||||||| |||||||||| ||||||||| |||| ||||||||||||||||    
T  6841381 tgttttcttatctatgtaattgatcatagtgtaatatattagcttctccattgtttatgacccgggcagtagcacgggtaaaag 6841464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 39704368 - 39704319
Alignment:
Q  351 cttctccattatttatgacc-gggcggtagcacgggtaaaagttatagta 399  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  39704368 cttctccattgtttatgacctgggcggtagcacgggtaaaagttatagta 39704319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 39445824 - 39445888
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagttatagt 398  Q
    |||| ||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||| ||||    
T  39445824 tattacaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 39445888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 35858425 - 35858532
Alignment:
Q  224 caccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattgaattgttttattttctat 323  Q
    |||||||||||||||||| || | |||  ||||  ||||||| ||| ||||||||| ||||||||||  || ||||   |||| ||||||| || |||||    
T  35858425 caccacttcaaatgtagtgtatacagatgtattttaaaatgtatgaacaactgttgtatgtcctaaactattgtttatgttgagttgtttt-ttatctat 35858523  T
Q  324 gtaatggat 332  Q
    |||||||||    
T  35858524 gtaatggat 35858532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 145 - 279
Target Start/End: Original strand, 24262549 - 24262683
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||||||||||||| |||||||||||  | | |||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  24262549 tatatgttgcaatctcacgtgttgcatcaagagatgatctaaagatattattaacagatgacaatgatgattgtatcaacaccacttcaaatgtagtata 24262648  T
Q  245 caaagagatattccaaaatgtttgagcaactgttg 279  Q
     |||||||||||||||||||||||| |||||||||    
T  24262649 taaagagatattccaaaatgtttgaacaactgttg 24262683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 29861495 - 29861375
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||||||| || |||| ||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||| ||    
T  29861495 tatatgttgcaatatcacgtgttacatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttta 29861396  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  29861395 taaggaaatattcgaaaatgt 29861375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 41813488 - 41813546
Alignment:
Q  341 aatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  41813488 aatatattagcttctccattgtttatgatccgggcggtagcacgggtaaaagttctagt 41813546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 17404955 - 17404837
Alignment:
Q  173 aagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagca 272  Q
    ||||||| || |||||||||||| | || |||| |||| ||| | ||   |||||||||||||||| || || |||||||||||| ||||||| ||| ||    
T  17404955 aagagatggtctgaagatattattagcgcatgacaatggggactataattacaccacttcaaatgttgtgtataaagagatattcgaaaatgtgtgaaca 17404856  T
Q  273 actgttgcatgtcctaaaa 291  Q
      ||||| |||||||||||    
T  17404855 cttgttgtatgtcctaaaa 17404837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 21207483 - 21207392
Alignment:
Q  302 attgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagt 392  Q
    ||||||| ||||| | ||| |||||||  ||| ||||||||||||| | ||| |||||| || ||| || ||||||||||||||||||||||    
T  21207483 attgaatcgttttgtattcgatgtaataaatcatattgcaatatatcagcttttccattgttaatgtcccgggcggtagcacgggtaaaagt 21207392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 17404824 - 17404766
Alignment:
Q  343 tatattaacttctccattatttatgaccgg-gcggtagcacgggtaaaagttatagtaa 400  Q
    |||||||  ||||||||| ||||||||| | ||||||||||||||||||||| ||||||    
T  17404824 tatattagtttctccattgtttatgacccgagcggtagcacgggtaaaagttctagtaa 17404766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 225 - 382
Target Start/End: Original strand, 10095337 - 10095495
Alignment:
Q  225 accacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattgaattgttttattttctatg 324  Q
    ||||||||||||||||| || ||||| ||||| ||||||| |||| ||||||||| |||| |||||||||||||||  | ||||||||||||||||||||    
T  10095337 accacttcaaatgtagtttataaagaaatatttcaaaatgattgaacaactgttgtatgttctaaaagatagtttctgtcgaattgttttattttctatg 10095436  T
Q  325 taatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcac 382  Q
     |||||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||    
T  10095437 caatggatcatattgcaatatattagcttctccattgtttatgacccggacggtagcac 10095495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 197 - 392
Target Start/End: Original strand, 27447068 - 27447264
Alignment:
Q  197 aacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatag 296  Q
    ||||||||| ||||  |||| | |||||||||||| ||||||||| || ||||||||||| |||||||| |||  || ||||| ||||||||||| || |    
T  27447068 aacggatgacaatggagattatttcaacaccactttaaatgtagtgtataaagagatatttcaaaatgtgtgaataattgttgtatgtcctaaaatattg 27447167  T
Q  297 tttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagt 392  Q
     ||   |||||||||||| || ||||| |||| |||| ||||| ||||| ||| ||| |||||| ||||||| ||||||||||||||||||||||||    
T  27447168 attatgttgaattgttttcttatctatataatagatcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgggtaaaagt 27447264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 21999392 - 21999272
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||| ||||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||| ||    
T  21999392 tatatattgcaatatcacgtgttacatcaagggatggtatgaagatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttta 21999293  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  21999292 taaggaaatattcaaaaatgt 21999272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 19121424 - 19121508
Alignment:
Q  316 ttttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagta 399  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||| |||||    
T  19121424 ttttctatgtaatgaatcttattgcaatatattaacttctccattgtctatgacccggacggtagcacgggtaaaagttctagta 19121508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 31891510 - 31891390
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||||||||| |||  |||| |||| |||||||||||  |||||||||||| |||| ||    
T  31891510 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacatatgacaatggggattgtatcagtaccacttcaaatatagttta 31891411  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  31891410 taaggaaatattcgaaaatgt 31891390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 30906326 - 30906235
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagta 399  Q
    |||||| |||||||||||||||||| ||||  |||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||    
T  30906326 tgttttgttttctatgtaatggatcatattataatatattaatttctccgttgtttatgacccgggcggtagcacgggtaaaagttctagta 30906235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 22681779 - 22681879
Alignment:
Q  165 gttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatg 264  Q
    ||||||| ||||||| || |||||||||||| |||| |||| |||| ||| ||||   ||||||||||||||||||| || |||||||||||| ||||||    
T  22681779 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaatgtagtgtataaagagatattcgaaaatg 22681878  T
Q  265 t 265  Q
    |    
T  22681879 t 22681879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 8976996 - 8977059
Alignment:
Q  337 ttgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagttatagta 399  Q
    ||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||| |||||    
T  8976996 ttgcaatatattagcttttccattgtttatgacccgggcggtagcacgggtaaaagttctagta 8977059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 33051422 - 33051359
Alignment:
Q  336 attgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagttatagt 398  Q
    ||||||| |||||| |||||||||| ||||||||| |||||||||||||| |||||||| ||||    
T  33051422 attgcaacatattaccttctccattgtttatgacccgggcggtagcacggataaaagttctagt 33051359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 233924 - 233827
Alignment:
Q  304 tgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagtaa 400  Q
    |||||| ||||||||||||||| ||||||| | |||||||||   | |||||| ||||||||||| ||| ||||||||| ||||| | ||| ||||||    
T  233924 tgaatttttttattttctatgttatggatcatgttgcaatattagaccttctcaattatttatgacccgtgcggtagcatgggtatatgttctagtaa 233827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 2918433 - 2918380
Alignment:
Q  339 gcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaag 391  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||||||    
T  2918433 gcaatatattaacttctccatttttaatgtcccgggcggtagcacgggtaaaag 2918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 3066429 - 3066494
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgaccg-ggcggtagcacgggtaaaagttatagta 399  Q
    |||| ||| |||||| |||||||||| |||||||||  |||||||||||||||||||||| |||||    
T  3066429 tattacaacatattaccttctccattgtttatgacccaggcggtagcacgggtaaaagttctagta 3066494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 33481903 - 33481843
Alignment:
Q  335 tattgcaatatattaacttctccatta-tttatgacc-gggcggtagcacgggtaaaagtt 393  Q
    |||||||| || ||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  33481903 tattgcaacatgttaacttctccattggtttatgacctgggcggtagcacgggtaaaagtt 33481843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 4659112 - 4659056
Alignment:
Q  343 tatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    |||||||  ||||||||| ||||||| |||| |||||||||||||||||||| ||||    
T  4659112 tatattagtttctccattgtttatgatccggtcggtagcacgggtaaaagttctagt 4659056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 207 - 398
Target Start/End: Complemental strand, 2040351 - 2040163
Alignment:
Q  207 aatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattga 306  Q
    ||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||    || ||| ||||||| || ||||    |||    
T  2040351 aatgatgattgtatcaaaaccacttcaaatgtagtgtataaagagatatttcaaaatgtgtgagcaa----tgtatgacctaaaatattgtttatgctga 2040256  T
Q  307 attgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    ||| |||| || ||||||||| ||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  2040255 attattttcttatctatgtaaaggataatattgcaatatattaatttctccattatttatgacccgggcggtagcacgggtaaaagttctagt 2040163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 23348008 - 23347888
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||||||| ||    
T  23348008 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttta 23347909  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  23347908 taaggagatattcgaaaatgt 23347888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 18354335 - 18354215
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| ||||  |||||||||| |||||||||||||||||| ||    
T  18354335 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttcaaatgtagttta 18354236  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  18354235 taaggagatattcgaaaatgt 18354215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 12742735 - 12742855
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| |||| | ||| ||||| |||||||||||||||||| ||    
T  12742735 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatgggaattatatcagcaccacttcaaatgtagttta 12742834  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  12742835 taaggagatattcgaaaatgt 12742855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 30015554 - 30015642
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttca 233  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||||| || |||||| |||| ||||||||||||||||||||||    
T  30015554 tatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaatggatgacaatggggattgtatcaacaccacttca 30015642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 30045098 - 30044966
Alignment:
Q  170 atcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaa---agagatattccaaaatgtt 266  Q
    ||||||| || || |||| ||||||| || |||||| |||| |||||||||||||||||||||||||||| |||| ||   ||||||||||||| ||||     
T  30045098 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgtactatataaattagagatattccaacatgta 30044999  T
Q  267 tgagcaactgttgcatgtcctaaaagatagttt 299  Q
    ||| ||||||||  |||||||||||||||||||    
T  30044998 tgaacaactgttatatgtcctaaaagatagttt 30044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 30050261 - 30050129
Alignment:
Q  170 atcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaa---agagatattccaaaatgtt 266  Q
    ||||||| || || |||| ||||||| || |||||| |||| |||||||||||||||||||||||||||| |||| ||   ||||||||||||| ||||     
T  30050261 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgtactatataaattagagatattccaacatgta 30050162  T
Q  267 tgagcaactgttgcatgtcctaaaagatagttt 299  Q
    ||| ||||||||  |||||||||||||||||||    
T  30050161 tgaacaactgttatatgtcctaaaagatagttt 30050129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 30141305 - 30141173
Alignment:
Q  170 atcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaa---agagatattccaaaatgtt 266  Q
    ||||||| || || |||| ||||||| || |||||| |||| |||||||||||||||||||||||||||| |||| ||   ||||||||||||| ||||     
T  30141305 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttcaaatgtactatataaattagagatattccaacatgta 30141206  T
Q  267 tgagcaactgttgcatgtcctaaaagatagttt 299  Q
    ||| ||||||||  |||||||||||||||||||    
T  30141205 tgaacaactgttatatgtcctaaaagatagttt 30141173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 30074651 - 30074739
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttca 233  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||||| || |||||| ||||  |||||||||||||||||||||    
T  30074651 tatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 30074739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 30242895 - 30242783
Alignment:
Q  248 agagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattgaattgttttattttctatgtaatggatcttattgcaatatat 347  Q
    ||||||||||||| | || ||| ||||||||  ||||||| |||||||||||   || ||||||||| || ||||||||||| ||  |||||||||||||    
T  30242895 agagatattccaacacgtgtgaacaactgttatatgtcctcaaagatagtttatgttaaattgttttcttatctatgtaatgaattatattgcaatatat 30242796  T
Q  348 taacttctccatt 360  Q
    || ||||||||||    
T  30242795 tagcttctccatt 30242783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 1613285 - 1613194
Alignment:
Q  302 attgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatg-accgggcggtagcacgggtaaaagt 392  Q
    ||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||||| ||| || |||  ||||||||||| |||| |||||||    
T  1613285 attgaatcgttttattttcgatgtaatagatcatattgcaatatatcaacttctcaattgttaatgttccgggcggtagtacggataaaagt 1613194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 9211537 - 9211634
Alignment:
Q  165 gttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaa 262  Q
    ||||||| ||||||| || |||||||||||| |||| |||| |||||||| ||||   ||||||||||| |||||||  | |||||||||||| ||||    
T  9211537 gttacattaagagatggtctgaagatattattaacgcatgacaatgaggactgtaattacaccacttcatatgtagtgcataaagagatattcaaaaa 9211634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 925055 - 925111
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaa 390  Q
    |||| |||||||||| |||||||||||||||| ||| ||||||||||||| ||||||    
T  925055 tattacaatatattagcttctccattatttataacctgggcggtagcacgagtaaaa 925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 197 - 392
Target Start/End: Complemental strand, 40290 - 40094
Alignment:
Q  197 aacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatag 296  Q
    ||||||||| ||||  |||| | |||||||||||| ||||||||| || ||||||||||| |||||||| |||  || ||||| ||||||||||| || |    
T  40290 aacggatgacaatggagattatttcaacaccactttaaatgtagtgtataaagagatatttcaaaatgtgtgaataattgttgtatgtcctaaaatattg 40191  T
Q  297 tttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagt 392  Q
     ||   |||||||||||| || ||||| |||| |||| ||||| ||||| ||| ||| |||||| ||||||| ||||||||||||||||||||||||    
T  40190 attatgttgaattgttttcttatctatataatagatcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgggtaaaagt 40094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 197 - 398
Target Start/End: Complemental strand, 33662 - 33478
Alignment:
Q  197 aacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatag 296  Q
    ||||||||| ||||  |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||  || ||||| ||||||||||| || |    
T  33662 aacggatgacaatggagattatatcaacaccacttcaaatgtagtatataaagtgatattccaaaatgtgtgaataattgttgtatgtcctaaaatattg 33563  T
Q  297 tttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgac-cgggcggtagcacgggtaaaagttat 395  Q
     ||   |||||||||||                  |||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||| |    
T  33562 attatgttgaattgttt------------------tcttattgcaatatattagcttttccattgtttatgactcgggcggtagcacgggtaaaagttct 33481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 9044896 - 9045014
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||||||| ||    
T  9044896 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttcaaatgtagttta 9044995  T
Q  245 caaagagatattccaaaat 263  Q
     || ||||||||| |||||    
T  9044996 taaggagatattcgaaaat 9045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 7472536 - 7472416
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||| ||||| ||||||||| ||||  |||||||||| |||||||||||||||||| ||    
T  7472536 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttcaaatgtagttta 7472437  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  7472436 taaggagatattcgaaaatgt 7472416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 30442924 - 30442804
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||| |||| ||||||||| |  ||||||||||||||||| ||    
T  30442924 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgtagttta 30442825  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  30442824 taaggagatattcgaaaatgt 30442804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 32871951 - 32872071
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||  |||| |||| ||||||||||| | |||||||||||||||| ||    
T  32871951 tatatgttgcaatatcacgtgttacatcaagggatggtatgaagatattattaacaaatgacaatggggattgtatcagcgccacttcaaatgtagttta 32872050  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  32872051 taaggagatattcgaaaatgt 32872071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 22003080 - 22002963
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||| ||||||||||| ||| || |||||||||||| ||||||| | |||| ||||||||||| |||||||||||||||||| ||    
T  22003080 tatatgttgcaatatcacgcgttacatcaagggatagtctgaagatattattaacggataacaatggggattgtatcagcaccacttcaaatgtagttta 22002981  T
Q  245 caaagagatattccaaaa 262  Q
     || ||||||||| ||||    
T  22002980 taaggagatattcgaaaa 22002963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 30441623 - 30441504
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||| | |||||||| |||||||| ||| || |||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||||||| ||    
T  30441623 tatatgttgcagtatcacgtgtgacatcaagggatggtctgaagaaattattaacggatgacaatg-ggattgtatcagcaccacttcaaatgtagttta 30441525  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  30441524 taaggagatattcgaaaatgt 30441504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 391
Target Start/End: Complemental strand, 22004684 - 22004578
Alignment:
Q  286 ctaaaagatagtttcaattgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatg-accgggcggtagcacgg 384  Q
    ||||||||||||||   |||||||||||| || ||||||||||| ||| ||||| ||||||||| |||||||||| || |||  |||||||||||||| |    
T  22004684 ctaaaagatagtttatgttgaattgttttcttatctatgtaatgaatcatattgtaatatattagcttctccatttttaatgtcccgggcggtagcacag 22004585  T
Q  385 gtaaaag 391  Q
    |||||||    
T  22004584 gtaaaag 22004578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 19081445 - 19081384
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgacc 370  Q
    |||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  19081445 tgttttcttttctatgtaatggatcatattgcaatatattagcttctccattgtttatgacc 19081384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 4734965 - 4734874
Alignment:
Q  302 attgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatgac-cgggcggtagcacgggtaaaagt 392  Q
    ||||||| ||||| ||||| ||||||| |||| | ||||||||||| | |||||||||| || ||| | |||||||||||||||||||||||    
T  4734965 attgaatcgttttgttttcgatgtaatagatcatgttgcaatatatcagcttctccattgttaatgtctcgggcggtagcacgggtaaaagt 4734874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 26836498 - 26836407
Alignment:
Q  302 attgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatg-accgggcggtagcacgggtaaaagt 392  Q
    ||||||| ||||| ||||| ||||||| |||| ||||||||||||| |  || |||||| || |||  ||||||||||||||||||||||||    
T  26836498 attgaatcgttttgttttcgatgtaatagatcatattgcaatatatcagtttttccattgttaatgtcccgggcggtagcacgggtaaaagt 26836407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 29656125 - 29656066
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagtt 393  Q
    |||||||| |||||| ||||||| || ||||||||| |||||||||||||||||||||||    
T  29656125 tattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagtt 29656066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 8163895 - 8164012
Alignment:
Q  148 atgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaa 247  Q
    |||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| || ||    
T  8163895 atgttgcaatatcacgtgttacatcaagggatggtttgaagatattattaacggatgacaatggggattatatcagcaccacttcaaatgtagtttataa 8163994  T
Q  248 agagatattccaaaatgt 265  Q
     ||||||||| |||||||    
T  8163995 ggagatattcgaaaatgt 8164012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 14672601 - 14672481
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||||||| || |||| ||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||| ||    
T  14672601 tatatgttgcaatatcacgtgttacatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttta 14672502  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  14672501 taaggaaatattcgaaaatgt 14672481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 216 - 398
Target Start/End: Complemental strand, 1848904 - 1848721
Alignment:
Q  216 tgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgtttgagcaactgttgcatgtcctaaaagatagtttcaattgaattgtttta 315  Q
    ||||| ||||||||||||||| |||| ||||| ||||| || |||||||| ||| ||||| ||| || |||||||| || |||| | || |||| |||||    
T  1848904 tgtattaacaccacttcaaatatagtgtacaaggagatttttcaaaatgtgtgaacaactattgtatatcctaaaatattgtttaagttcaattctttta 1848805  T
Q  316 ttttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    || ||||||||||||||| |||   |||||||||  || |||||| ||||||| |||| |||||||   |||||||||||||||    
T  1848804 ttatctatgtaatggatcatatcataatatattagtttttccattgtttatgacccggacggtagcgtaggtaaaagttatagt 1848721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 33686301 - 33686215
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccactt 231  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||  ||| ||||||||||||||| ||||    
T  33686301 tatatgttgcaatatcacgtgttacatcaagagatggtttgaagatattattaacggatgacgatggggattgtatcaacactactt 33686215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 1849942 - 1849846
Alignment:
Q  303 ttgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||  || |||||| ||||||| ||||| ||||||||||||||| ||| ||||    
T  1849942 ttgaattgttttcttatctatgtaatggatcatattgcaatatattagtttatccattgtttatgacccgggtggtagcacgggtaaatgttctagt 1849846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 27671415 - 27671511
Alignment:
Q  303 ttgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||| |||||||||||||||| | |||| |||||| ||  ||||||||| ||||    
T  27671415 ttgaattgttttattttctatgtaatggatcatattgcaatgaattagcttctccattatttataatccggacggtagtacaagtaaaagttctagt 27671511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 33199052 - 33199125
Alignment:
Q  322 atgtaatggatcttattgcaatatattaacttctccattatttatga--ccgggcggtagcacgggtaaaagtt 393  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||  ||||| | |||||||||||||||||    
T  33199052 atgtaatggatcttattgcaatatattatcttctccattgtttatgaccccgggtgatagcacgggtaaaagtt 33199125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 11730390 - 11730443
Alignment:
Q  212 ggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||||||||||| |||||||||||| |||||| | |||||||||||    
T  11730390 ggattgtatcaacaccacttgaaatgtagtatataaagaggtgttccaaaatgt 11730443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 23740702 - 23740755
Alignment:
Q  212 ggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||||||||||| |||||||||||| |||||| | |||||||||||    
T  23740702 ggattgtatcaacaccacttgaaatgtagtatataaagaggtgttccaaaatgt 23740755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 27535549 - 27535501
Alignment:
Q  322 atgtaatggatcttattgcaatatattaacttctccattatttatgacc 370  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  27535549 atgtaatggatcatattgcaatatattagcttctccattgtttatgacc 27535501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 15610399 - 15610346
Alignment:
Q  341 aatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagtt 393  Q
    |||||| || |||||||||| ||||||||| |||||||||||||||||||||||    
T  15610399 aatatactagcttctccattgtttatgacccgggcggtagcacgggtaaaagtt 15610346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 34345916 - 34346013
Alignment:
Q  303 ttgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagta 399  Q
    ||||||| |||| || ||||||||||| ||| ||||||||| |||||  |||| |||| ||||||| |||| |||||||| || |||||||| |||||    
T  34345916 ttgaattattttcttatctatgtaatgtatcatattgcaatgtattagtttcttcattgtttatgatccggacggtagcaaggataaaagttctagta 34346013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 27535476 - 27535408
Alignment:
Q  198 acggatgataatgaggattgtatcaacaccacttcaaatgta-gtatacaaagagatattccaaaatgt 265  Q
    |||||||| |||||||||||||||| ||||||||||||| || || ||||| ||||||||  |||||||    
T  27535476 acggatgacaatgaggattgtatcagcaccacttcaaatttatgtttacaaggagatatttgaaaatgt 27535408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 9374671 - 9374612
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagtt 393  Q
    |||||||| |||||| ||||||| || ||||||||| |||||||||||||| ||||||||    
T  9374671 tattgcaacatattaccttctcctttgtttatgacccgggcggtagcacggataaaagtt 9374612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 40398875 - 40398821
Alignment:
Q  303 ttgaattgttttattttctatgtaatggatcttattgcaatatattaacttctcc 357  Q
    |||||||||||| || ||||| ||||||||| |||||| ||||||||| ||||||    
T  40398875 ttgaattgttttcttatctatataatggatcatattgctatatattaatttctcc 40398821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 10342 - 10222
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    |||||||||| || |||||||||||||||||  || || |||||||||||| ||||||| | |||||||||||||||| |||||| ||||||||||| ||    
T  10342 tatatgttgcgatatcacgtgttacatcaaggaatggtctgaagatattattaacggataacaatgaggattgtatcagcaccacctcaaatgtagttta 10243  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  10242 taaggagatattcgaaaatgt 10222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 37044 - 37164
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| |||||||||| |||||| ||| || |||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||| ||    
T  37044 tatatgttgcaatatcacgtgttatatcaagggatggtctgaagatattattaacagatgacaatggggattgtatcagcaccacttcaaatgtagttta 37143  T
Q  245 caaagagatattccaaaatgt 265  Q
     || || |||||| |||||||    
T  37144 taaggaaatattcgaaaatgt 37164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 25226742 - 25226862
Alignment:
Q  145 tatatgttgcaatctcacgtgttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtata 244  Q
    ||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||| |||| ||||||||| |  ||||||||||||||| | ||    
T  25226742 tatatgttgcaatatcacgtgttacatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttcaaatgtaattta 25226841  T
Q  245 caaagagatattccaaaatgt 265  Q
     || ||||||||| |||||||    
T  25226842 taaggagatattcgaaaatgt 25226862  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 165 - 291
Target Start/End: Complemental strand, 32437687 - 32437561
Alignment:
Q  165 gttacatcaagagatcgtatgaagatattatcaacggatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatg 264  Q
    ||||||| ||||||| || |||||||||||| |||| |||| |||| ||| ||||   ||||||||||||||||||| || |||||||||||| ||||||    
T  32437687 gttacattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttcaaatgtagtgtataaagagatattcgaaaatg 32437588  T
Q  265 tttgagcaactgttgcatgtcctaaaa 291  Q
    | ||| || |||||  || ||||||||    
T  32437587 tgtgatcacctgttatatatcctaaaa 32437561  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 23597948 - 23597858
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    ||||||||| |||||||||||  || |||||||||||||||  ||||||||| ||||||| |||| |||| ||||||||||||||| ||||    
T  23597948 tgttttattatctatgtaatgattcatattgcaatatattagtttctccattgtttatgagccggacggtggcacgggtaaaagttttagt 23597858  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 7604917 - 7604858
Alignment:
Q  341 aatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagta 399  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  7604917 aatatattagcttctccattgtttatgatccgggcggtagcacgggtaaaagttctagta 7604858  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 42773298 - 42773362
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaagttatagt 398  Q
    |||||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||| ||||    
T  42773298 tattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 42773362  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 31768471 - 31768413
Alignment:
Q  341 aatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    |||||||||  ||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  31768471 aatatattagtttctccattgtttatgatccgggcggtagcacgggtaaaagttctagt 31768413  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 50992867 - 50992924
Alignment:
Q  309 tgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttat 366  Q
    |||||| |||| ||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  50992867 tgttttcttttatatgtaatggatcatattgcaatatattagcttctctattgtttat 50992924  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 28237400 - 28237344
Alignment:
Q  335 tattgcaatatattaacttctccattatttatgacc-gggcggtagcacgggtaaaa 390  Q
    |||||||| |||||| ||||||| || ||||||||| ||| ||||||||||||||||    
T  28237400 tattgcaacatattaccttctcctttgtttatgacccgggtggtagcacgggtaaaa 28237344  T

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Target: scaffold0318 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 6493 - 6591
Alignment:
Q  304 tgaattgttttattttctatgtaatggatcttattgcaatatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagtaaa 401  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||  |||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  6493 tgaattgttttcttatctatgtaatggatcatattgcaatatattagtttctccattggttatgacccgggcgatagcacgggtaaaagttctagtaaa 6591  T

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Target: scaffold0096 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 32509 - 32593
Alignment:
Q  184 tgaagatattatcaacg---gatgataatgaggattgtatcaacaccacttcaaatgtagtatacaaagagatattccaaaatgt 265  Q
    |||||||||||| ||||   ||||| |||| ||||||||||| |||||||||||||||||| || || ||||||||| |||||||    
T  32509 tgaagatattattaacgacagatgacaatggggattgtatcagcaccacttcaaatgtagtttaaaaggagatattcgaaaatgt 32593  T

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Target: scaffold0096; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 32453 - 32501
Alignment:
Q  322 atgtaatggatcttattgcaatatattaacttctccattatttatgacc 370  Q
    ||||||| |||| ||||||||||||||| |||||||||| |||||||||    
T  32453 atgtaatagatcatattgcaatatattagcttctccattgtttatgacc 32501  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 6409 - 6353
Alignment:
Q  343 tatattaacttctccattatttatga-ccgggcggtagcacgggtaaaagttatagt 398  Q
    |||||||  ||||||||| ||||||| |||| |||||||||||||||||||| ||||    
T  6409 tatattagtttctccattgtttatgatccggtcggtagcacgggtaaaagttctagt 6353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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