View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4248_low_5 (Length: 401)

Name: NF4248_low_5
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4248_low_5
NF4248_low_5
[»] scaffold0434 (1 HSPs)
scaffold0434 (17-376)||(5958-6316)
[»] scaffold0848 (1 HSPs)
scaffold0848 (261-344)||(2178-2261)
[»] scaffold0088 (1 HSPs)
scaffold0088 (232-351)||(35548-35669)
[»] chr1 (1 HSPs)
chr1 (234-352)||(18513877-18513997)
[»] chr8 (1 HSPs)
chr8 (283-351)||(17290591-17290659)
[»] chr3 (3 HSPs)
chr3 (244-344)||(24177926-24178025)
chr3 (300-351)||(30993295-30993346)
chr3 (232-268)||(32657341-32657377)
[»] scaffold0686 (1 HSPs)
scaffold0686 (343-376)||(2222-2255)
[»] scaffold0081 (1 HSPs)
scaffold0081 (343-376)||(3981-4014)
[»] scaffold0006 (2 HSPs)
scaffold0006 (343-376)||(97989-98022)
scaffold0006 (343-376)||(107267-107300)
[»] chr7 (1 HSPs)
chr7 (343-376)||(9176812-9176845)
[»] chr6 (1 HSPs)
chr6 (343-376)||(35012103-35012136)
[»] scaffold0094 (1 HSPs)
scaffold0094 (295-351)||(48234-48290)


Alignment Details
Target: scaffold0434 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 6316 - 5958
Alignment:
Q  17 aagatcataattgaaaccaaggtaatcaggcgaaacaacataaatagtgtcgaaacagtagtaatccnnnnnnnnnnnnnnnnnnntaggaatagtaatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||                   ||||||||||||||    
T  6316 aagatcataattgaaaccaaggtaatcaggcgaaacaacataaatagtgtcgaat-agtagtaatcccaaacaaaacaaaacaaaataggaatagtaatg 6218  T
Q  117 gatcattaggaagttgctagttgtggattttaggtatgaaaaaccatagttatcacatcacaatttaacgaaggactatcacaactaatcaaacacacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6217 gatcattaggaagttgctagttgtggattttaggtatgaaaaaccatagttatcacatcacaatttaacgaaggactatcacaactaatcaaacacacaa 6118  T
Q  217 tcatagcaacgtataagagcacaaatttaacatgaatttatcaaaagatcataaaagaataatagaaaacaaaaaactttcattacccatatattcatgt 316  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6117 tcatagcaacgtataagagcacgaatttaacatgaatttatcaaaagatcataaaagaataatagaaaacaaaaatctttcattacccatatattcatgt 6018  T
Q  317 aacccttacggtgaatagagactccccccttaccttaagaaatcgatggacaccctcttc 376  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6017 aacccttactgtgaatagagactccccccttaccttaagaaatcgatggacaccctcttc 5958  T

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Target: scaffold0848 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 2261 - 2178
Alignment:
Q  261 aagatcataaaagaataatagaaaacaaaaaactttcattacccatatattcatgtaacccttacggtgaatagagactccccc 344  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2261 aagatcataaaagaataatagaaaacaaaaacctttcattacccatatattcatttaacccttacggtgaatagagactccccc 2178  T

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Target: scaffold0088 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 35669 - 35548
Alignment:
Q  232 agagcacaaatttaacatgaatttatcaaaagatcataa-aagaataatagaaaacaaaaaac-tttcattacccatatattcatgtaacccttacggtg 329  Q
    |||||||||||||||||||||||    |||||||| ||| || ||||||| |||| | ||||| ||||| ||||||||| || ||  |||||||||| ||    
T  35669 agagcacaaatttaacatgaattcggtaaaagatcgtaagaaaaataataaaaaaaataaaacctttcactacccatatgttgatacaacccttacgctg 35570  T
Q  330 aatagagactccccccttacct 351  Q
    ||||||||||||||||||||||    
T  35569 aatagagactccccccttacct 35548  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 18513997 - 18513877
Alignment:
Q  234 agcacaaatttaacatgaatttatcaaaagatcat-aaaagaataatagaaaa-caaaaaactttcattacccatatattcatgtaacccttacggtgaa 331  Q
    |||| ||||||||||||||||||| |||||||||| |||| || |  |||||| || ||| |||||| |||| |||| |||||  |||||||| ||||||    
T  18513997 agcataaatttaacatgaatttattaaaagatcatgaaaacaaaagaagaaaatcataaacctttcactacctatatgttcatacaacccttatggtgaa 18513898  T
Q  332 tagagactccccccttacctt 352  Q
    |||||||| ||||||||||||    
T  18513897 tagagacttcccccttacctt 18513877  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 17290591 - 17290659
Alignment:
Q  283 aaacaaaaaactttcattacccatatattcatgtaacccttacggtgaatagagactccccccttacct 351  Q
    ||||||||| | ||||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  17290591 aaacaaaaacccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacct 17290659  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 24178025 - 24177926
Alignment:
Q  244 taacatgaatttatcaaaagatcataaaagaataatagaaaacaaaaaactttcattacccatatattcatgtaacccttacggtgaatagagactcccc 343  Q
    ||||||||||| || |||||||||| ||| || ||| ||||| ||||| | |||| ||||||||| |||||  || ||||| ||||||||||||||||||    
T  24178025 taacatgaattcattaaaagatcatgaaa-aacaatggaaaataaaaacccttcactacccatatgttcatagaatccttatggtgaatagagactcccc 24177927  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 30993346 - 30993295
Alignment:
Q  300 tacccatatattcatgtaacccttacggtgaatagagactccccccttacct 351  Q
    ||||||||| |||||  |||||||| ||||||||||||||||||||||||||    
T  30993346 tacccatatgttcatacaacccttatggtgaatagagactccccccttacct 30993295  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 32657377 - 32657341
Alignment:
Q  232 agagcacaaatttaacatgaatttatcaaaagatcat 268  Q
    ||||||||||||||||||||||| || ||||||||||    
T  32657377 agagcacaaatttaacatgaattcattaaaagatcat 32657341  T

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Target: scaffold0686 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 2222 - 2255
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  2222 cccttaccttaagaaatcgatggacaacctcttc 2255  T

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Target: scaffold0081 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 4014 - 3981
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  4014 cccttaccttaagaaatcgatggacaacctcttc 3981  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 97989 - 98022
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  97989 cccttaccttaagaaatcgatggacaacctcttc 98022  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 107267 - 107300
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  107267 cccttaccttaagaaatcgatggacaacctcttc 107300  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 9176845 - 9176812
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  9176845 cccttaccttaagaaatcgatggacaacctcttc 9176812  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 35012103 - 35012136
Alignment:
Q  343 cccttaccttaagaaatcgatggacaccctcttc 376  Q
    |||||||||||||||||||||||||| |||||||    
T  35012103 cccttaccttaagaaatcgatggacagcctcttc 35012136  T

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Target: scaffold0094 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 48234 - 48290
Alignment:
Q  295 ttcattacccatatattcatgtaacccttacggtgaatagagactccccccttacct 351  Q
    |||| |||||||||  ||||  || ||||| ||||||||||||||||||||||||||    
T  48234 ttcactacccatatgatcatacaatccttatggtgaatagagactccccccttacct 48290  T

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