View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_7 (Length: 360)
Name: NF4248_low_7
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 39121278 - 39121611
Alignment:
| Q |
12 |
atgaatatcaggaaggaaatatagaagccgctttgcatgtttttgaaggcataaacatagctgctttgactcctaagataaaagttttccttgccaaaag |
111 |
Q |
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| T |
39121278 |
atgaatatcaggaaggaaatatagaagccgctttgcatgtttttgaaggcataaacatagctgctttgactcctaagataaaagttttccttgccaaaag |
39121377 |
T |
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| Q |
112 |
caaagaacgccccaagagacgctctcagaattacactactccaccaatgtctatacatacagctggattactattagaggcgatctttctaaaggcaaaa |
211 |
Q |
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| T |
39121378 |
cacagaacgccccaagagacgctctcagaattacactactccaccaatgtctatacatacagctggattactattagaggcgatctttctaaaggcaaaa |
39121477 |
T |
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| Q |
212 |
tgtttgcaggttcttgcaaggtttgaaggtacccttattgattgtttgatctttgcttttaacttgataattctgttaaatattccgtcttccttatttg |
311 |
Q |
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| T |
39121478 |
tgtttgcaggttcttgcaaggtttgaaggtacccttattgattgtttgatctttgcttttaacttgataattctgttaaatattccgtcttccttatttg |
39121577 |
T |
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| Q |
312 |
aacatagtgttcgttatgccttactatgagatttt |
346 |
Q |
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| T |
39121578 |
aacatagtgttcgttatgccttact-tgagatttt |
39121611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 30286199 - 30286095
Alignment:
| Q |
157 |
aatgtctatacatacagctggattactattagaggcgatctttctaaaggcaaaatgtttgcaggttcttgcaaggtttgaaggtacccttattgattgt |
256 |
Q |
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| T |
30286199 |
aatgtctatacattctgttggcttactgtttgaagcactctttctaaaagcaaaatcattgcaggctcttgaaaggtttaaaggtaaccttgctggttgt |
30286100 |
T |
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| Q |
257 |
ttgat |
261 |
Q |
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||||| |
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| T |
30286099 |
ttgat |
30286095 |
T |
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