View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4248_low_8 (Length: 352)
Name: NF4248_low_8
Description: NF4248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4248_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 75 - 346
Target Start/End: Complemental strand, 34813670 - 34813399
Alignment:
| Q |
75 |
atcatttgcttgtccatctcacacttcatcctaatagtatcgtgaaaaaccatgcccttaaatttgctttgtggtataaaaacttgaagaagaaaatgca |
174 |
Q |
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| T |
34813670 |
atcatttgcttgtccatctcacacttcatcctaaaagtatcgtgaaaaaccatgcccttaaatttgctttgtggtataaaaacttgaagaagaaaatgca |
34813571 |
T |
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| Q |
175 |
ctctagctaaaggagttgaaaccagtgtttaatatacattatgagaaagcttagaacannnnnnngacatgaagaaagcatagaacttgacgcatataat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34813570 |
ctctagctaaaggagttgaaaccagtgtttaatatacattatgagaaagcttagaacatttttttgacatgaagaaagcatagaacttgacgcatataat |
34813471 |
T |
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| Q |
275 |
attaaataaaccatctgatcaaactttatttaaacaaggcagcttaatttccttcaatgtccttcatctcac |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34813470 |
attaaataaaccatctgatcaaactttatttaaacaaggcagcttaatttccttcaatgtccttcatatcac |
34813399 |
T |
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