View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4249_low_1 (Length: 487)

Name: NF4249_low_1
Description: NF4249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4249_low_1
NF4249_low_1
[»] chr4 (13 HSPs)
chr4 (14-203)||(9769596-9769787)
chr4 (293-446)||(12215561-12215713)
chr4 (293-446)||(17264356-17264507)
chr4 (307-436)||(18631908-18632039)
chr4 (293-444)||(22296798-22296948)
chr4 (404-456)||(12880925-12880977)
chr4 (214-266)||(22296753-22296805)
chr4 (295-446)||(30242963-30243112)
chr4 (219-265)||(13208525-13208571)
chr4 (324-390)||(20314186-20314251)
chr4 (293-334)||(31996872-31996913)
chr4 (218-262)||(12215520-12215564)
chr4 (316-356)||(19335316-19335356)
[»] chr1 (9 HSPs)
chr1 (293-456)||(25426217-25426377)
chr1 (295-456)||(36977669-36977829)
chr1 (298-436)||(36758303-36758439)
chr1 (307-431)||(10828392-10828513)
chr1 (316-359)||(21448763-21448806)
chr1 (316-359)||(31260733-31260776)
chr1 (308-381)||(16258723-16258795)
chr1 (218-268)||(15182773-15182823)
chr1 (318-359)||(1298625-1298666)
[»] chr6 (11 HSPs)
chr6 (307-439)||(17358390-17358520)
chr6 (344-456)||(26270156-26270267)
chr6 (307-438)||(24967030-24967160)
chr6 (320-452)||(13248516-13248648)
chr6 (307-390)||(24654008-24654090)
chr6 (363-456)||(24968844-24968936)
chr6 (307-381)||(24320529-24320603)
chr6 (216-265)||(13248446-13248495)
chr6 (316-390)||(15550973-15551046)
chr6 (318-351)||(8323009-8323042)
chr6 (403-439)||(11642459-11642495)
[»] chr7 (7 HSPs)
chr7 (302-435)||(21546373-21546505)
chr7 (296-433)||(29555217-29555354)
chr7 (316-456)||(12865061-12865200)
chr7 (316-359)||(16799156-16799199)
chr7 (323-360)||(8038966-8039004)
chr7 (307-360)||(17887827-17887880)
chr7 (404-456)||(23804303-23804354)
[»] chr5 (10 HSPs)
chr5 (319-456)||(20593038-20593174)
chr5 (307-454)||(20102989-20103136)
chr5 (317-456)||(15609015-15609153)
chr5 (319-456)||(20593953-20594088)
chr5 (295-438)||(18808220-18808362)
chr5 (307-388)||(26271123-26271203)
chr5 (316-359)||(26456063-26456106)
chr5 (218-260)||(40028759-40028800)
chr5 (326-391)||(15492257-15492321)
chr5 (293-389)||(24543801-24543895)
[»] chr3 (3 HSPs)
chr3 (293-389)||(32198614-32198710)
chr3 (316-359)||(30510771-30510814)
chr3 (218-270)||(32198699-32198751)
[»] chr2 (2 HSPs)
chr2 (293-440)||(30699173-30699319)
chr2 (293-439)||(4451522-4451666)
[»] chr8 (6 HSPs)
chr8 (307-390)||(3826117-3826200)
chr8 (307-446)||(3863733-3863870)
chr8 (403-437)||(13530063-13530097)
chr8 (403-437)||(13619602-13619636)
chr8 (318-358)||(20268338-20268378)
chr8 (318-358)||(21054967-21055007)
[»] scaffold0113 (1 HSPs)
scaffold0113 (318-388)||(6554-6624)
[»] scaffold0340 (1 HSPs)
scaffold0340 (318-359)||(16883-16924)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 9769787 - 9769596
Alignment:
Q  14 agataacaagctataagaaaacaaatagaacaaaatcaatagacagaattatttcctaacaggctcttacaagtttacgagtctagaagac--aacattt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  9769787 agataacaagctataagaaaacaaagagaacaaaatcaatagatagaattatttcctaacaggctcttacaagtttacgagtctagaagacaaaacattt 9769688  T
Q  112 tttagtaactgcaatgagttatgaaaagttgaagccgaaaacatttgttgatgcatgtcatttgattgttggtcatcttacgttattttcaa 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  9769687 tttagtaactgcaatgagttatgaaaagttgaagcagaaaacatttattgatgcatgttatttgattgttagtcatcttacgttattttcaa 9769596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 446
Target Start/End: Original strand, 12215561 - 12215713
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttg 392  Q
    |||| ||| ||||| ||||||| | |||||||| ||||||||||| || |||||||||| ||||| || |||||||||| |||||||||| |||||| |     
T  12215561 agaatttgctcattatttaagggaaattttgtattgttttcatatcgagtcatgtaattatagttcttcactaaaccaatcaattcttaggtgttttgt- 12215659  T
Q  393 aagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaaga 446  Q
    ||||||||  |||||||||||||| | ||| |||| ||||||| ||| ||||||    
T  12215660 aagtattctattgaaaaatcatgttattcgacaaatcaagacatctcatgaaga 12215713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 293 - 446
Target Start/End: Complemental strand, 17264507 - 17264356
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttg 392  Q
    |||||||||||||  || |||| | ||||| ||||||||||||||  | |||||||||||||||||||| || ||||||| ||||||| ||| |||||      
T  17264507 agaagttgttcatgattcaagggatattttctaatgttttcatatcaagtcatgtaattctagtttttacctgaaccaagaaattcttcgat-tttttgt 17264409  T
Q  393 aagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaaga 446  Q
    |||||||| | | ||||||||||||| |  ||||||||||||||||| ||||||    
T  17264408 aagtattctggt-aaaaatcatgtaatttagcaaagcaagacacctcatgaaga 17264356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 18631908 - 18632039
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattcta----gtttttaactaaaccaagcaattcttagatgttttttgaagtattccg 402  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||     |||||  ||||| ||||||||| |||  |||||| | ||||||||      
T  18631908 gtttaagggacattttgtaatattttcatattgagtcatgtaattataatttttttttctctaaa-caagcaattattatgtgttttgt-aagtattcta 18632005  T
Q  403 ttgaaaaatcatgtaaatcggcaaagcaagacac 436  Q
    |||||||||||||||| | |||||||||||||||    
T  18632006 ttgaaaaatcatgtaatttggcaaagcaagacac 18632039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 444
Target Start/End: Original strand, 22296798 - 22296948
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttg 392  Q
    |||||||| |||| ||||| |  |||||| ||||| |||| |||| || |||| || || ||||| ||  |||||||||| ||||| |||  |||||| |    
T  22296798 agaagttgctcatggtttacgagacatttcgtaatattttaatatcgagtcatttatttttagttcttccctaaaccaagtaattcctaggagttttt-g 22296896  T
Q  393 aagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaa 444  Q
     |||||||  |||||||||||||||| ||||||||| || ||||||| ||||    
T  22296897 tagtattctattgaaaaatcatgtaattcggcaaagtaaaacacctcatgaa 22296948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 12880977 - 12880925
Alignment:
Q  404 tgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    ||||||||||||||| |||||||||||||||||||| || | |||| ||||||    
T  12880977 tgaaaaatcatgtaattcggcaaagcaagacacctcatggaaattttggaaga 12880925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 22296753 - 22296805
Alignment:
Q  214 ccagtcattttagtaatgatttgaatcaataaaaaggagttttagagaagttg 266  Q
    ||||||||||||||| ||| |||| | |||||| |||||||||||||||||||    
T  22296753 ccagtcattttagtagtgacttgagttaataaagaggagttttagagaagttg 22296805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 446
Target Start/End: Complemental strand, 30243112 - 30242963
Alignment:
Q  295 aagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaa 394  Q
    |||||||| || |||||||| ||||  | ||||||||||||||  | |||||||||||||||| ||   ||||||||||||| ||||| | |||| | ||    
T  30243112 aagttgtttatggtttaagggacatcctctaatgttttcatata-agtcatgtaattctagttcttccttaaaccaagcaatacttaggtattttgt-aa 30243015  T
Q  395 gtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaaga 446  Q
    |||||   |||||||||||| ||| |  ||||||||| ||| ||| ||||||    
T  30243014 gtattgttttgaaaaatcatataattttgcaaagcaaaacatctcatgaaga 30242963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 13208525 - 13208571
Alignment:
Q  219 cattttagtaatgatttgaatcaataaaaaggagttttagagaagtt 265  Q
    |||||||||| |||||||| |||||||| |||| |||||||||||||    
T  13208525 cattttagtagtgatttgagtcaataaagaggaattttagagaagtt 13208571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 20314186 - 20314251
Alignment:
Q  324 taatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttt 390  Q
    |||||| |||||||| | |||||||||||||| ||||  | |||||||||||||||||| |||||||    
T  20314186 taatgtattcatatttagtcatgtaattctag-ttttcccaaaaccaagcaattcttaggtgttttt 20314251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 31996913 - 31996872
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttca 334  Q
    ||||||||||||| || ||| |||||||||||||||||||||    
T  31996913 agaagttgttcatggtctaacgtacattttgtaatgttttca 31996872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 12215520 - 12215564
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaa 262  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||    
T  12215520 tcattttagtatagatttgagtcaataaagaggagttttagagaa 12215564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 19335316 - 19335356
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagt 356  Q
    |||||||||||||||||||| | || |||||||||||||||    
T  19335316 acattttgtaatgttttcatttcgagtcatgtaattctagt 19335356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 456
Target Start/End: Complemental strand, 25426377 - 25426217
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttg 392  Q
    |||||||| |||| |||||||| |||||||||| |||||||||||  | |||||||||| ||||| ||  |||||||||||||||||||| | |||| |     
T  25426377 agaagttgctcatggtttaagggacattttgta-tgttttcatatcaagtcatgtaattatagttcttccctaaaccaagcaattcttaggtattttgt- 25426280  T
Q  393 aagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    ||||||||  |||||||  ||||||| |||||||||||||||||||| |||||| || ||||||    
T  25426279 aagtattctattgaaaag-catgtaattcggcaaagcaagacacctcatgaagaattgggaaga 25426217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 456
Target Start/End: Complemental strand, 36977829 - 36977669
Alignment:
Q  295 aagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaa 394  Q
    |||||| |||| |||||||| |||||||||||| ||||||||| || |||||||||| ||||| ||  |||||||||  ||  | ||| |||||| | ||    
T  36977829 aagttgatcatggtttaaggaacattttgtaatattttcatatcgagtcatgtaattttagttcttgcctaaaccaataaaaccgtaggtgttttat-aa 36977731  T
Q  395 gtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    |||||   |||||||||||||||| |||||||| ||||||||||  |||||| |||||||||    
T  36977730 gtattttattgaaaaatcatgtaattcggcaaatcaagacaccttatgaagaattaggaaga 36977669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 36758303 - 36758439
Alignment:
Q  298 ttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagta 397  Q
    ||||| || |||||||| ||||||||| |||||||||||| || ||||||||| || ||| ||  | |||||||| ||||||||| |  ||||||| |||    
T  36758303 ttgttaatggtttaagggacattttgttatgttttcatatcgagtcatgtaatcctggttcttcccaaaaccaagaaattcttaggt-atttttgatgta 36758401  T
Q  398 ttccgttgaaaaatcatgtaaatcggcaaagcaagacac 436  Q
    || | ||| |||||||||||| ||||||||| |||||||    
T  36758402 tttcattg-aaaatcatgtaattcggcaaagtaagacac 36758439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 431
Target Start/End: Complemental strand, 10828513 - 10828392
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttga 406  Q
    |||||| | |||||||||||||||||||| | || ||||| ||||| |||||||  | |||||||||| |||||||||| ||||||| ||| |||  ||     
T  10828513 gtttaaaggacattttgtaatgttttcatttcgagtcatgcaattcaagttttt--cgaaaccaagcagttcttagatg-tttttgatgtaatccaatgc 10828417  T
Q  407 aaaatcatgtaaatcggcaaagcaa 431  Q
    ||||||| | |||||||||||||||    
T  10828416 aaaatcaggcaaatcggcaaagcaa 10828392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 21448763 - 21448806
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  21448763 acattttgtaatgttttcattttgagtcatgtaattctagtttt 21448806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 31260733 - 31260776
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  31260733 acattttgtaatgttttcatatcgattcatgtaattatagtttt 31260776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 16258795 - 16258723
Alignment:
Q  308 tttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattctta 381  Q
    ||||||| | ||||||||||||||||| ||||| |||||||||| ||| ||||  | |||||||||||||||||    
T  16258795 tttaagggatattttgtaatgttttcacattgagtcatgtaattttag-ttttctcaaaaccaagcaattctta 16258723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 15182773 - 15182823
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaagttgtt 268  Q
    ||||||||  ||| |||||| |||||||| |||||||||||||||||||||    
T  15182773 tcattttatcaatcatttgagtcaataaataggagttttagagaagttgtt 15182823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 1298666 - 1298625
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  1298666 attttgtcatattttcatattgagtcatgtaattctagtttt 1298625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 17358390 - 17358520
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttga 406  Q
    |||||| | ||||| ||||||||||||||||||| |||||||||||||| ||||  |||| |||||||||||| |  || ||||||| ||| | ||||||    
T  17358390 gtttaatgaacattctgtaatgttttcatattgagtcatgtaattctag-ttttccctaacccaagcaattctcatgtg-tttttgatgtaattcgttga 17358487  T
Q  407 aaaatcatgtaaatcggcaaagcaagacacctc 439  Q
    |||||||||| | ||||||||||||||||||||    
T  17358488 aaaatcatgtgattcggcaaagcaagacacctc 17358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 344 - 456
Target Start/End: Original strand, 26270156 - 26270267
Alignment:
Q  344 atgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtga 443  Q
    |||||||||||||| ||  ||||||||| |||||||||| || ||| | ||||||||  |||||||||||||||| |||||||||||||||||||| | |    
T  26270156 atgtaattctagttctttcctaaaccaaacaattcttaggtgatttgt-aagtattcaattgaaaaatcatgtaattcggcaaagcaagacacctcctaa 26270254  T
Q  444 agatttaggaaga 456  Q
    ||| ||| |||||    
T  26270255 agaattaagaaga 26270267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 438
Target Start/End: Original strand, 24967030 - 24967160
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttga 406  Q
    |||||||| | ||||| ||||||||||||||||| ||||| |||||||||| ||  |||||| |||||||| |||| |  ||||||| ||||| | ||||    
T  24967030 gtttaagggatattttataatgttttcatattgagtcatgaaattctagttcttccctaaacaaagcaattattaggt-atttttgatgtatttcattga 24967128  T
Q  407 aaaatcatgtaaatcggcaaagcaagacacct 438  Q
    ||||||||| || | |||||| ||||||||||    
T  24967129 aaaatcatgcaatttggcaaatcaagacacct 24967160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 452
Target Start/End: Original strand, 13248516 - 13248648
Alignment:
Q  320 tttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgtaaa 419  Q
    ||||||||||||||||||  | ||||||||||||| || ||   |||||||| |||||  ||| | || ||  ||||||||  |||||||||||||||      
T  13248516 tttgtaatgttttcatatcaagtcatgtaattctacttcttccataaaccaaacaatttgtaggttttcttgtaagtattctattgaaaaatcatgtatt 13248615  T
Q  420 tcggcaaagcaagacacctcgtgaagatttagg 452  Q
    |||||||||||||||||||| |||||| |||||    
T  13248616 tcggcaaagcaagacacctcatgaagaattagg 13248648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 24654008 - 24654090
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttt 390  Q
    |||||||| |||||||||||| |||| ||||||| ||||| ||||| |||| ||  ||||||||||||||||||||||||||||    
T  24654008 gtttaaggcacattttgtaatatttttatattgagtcatg-aattcaagttcttccctaaaccaagcaattcttagatgttttt 24654090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 24968844 - 24968936
Alignment:
Q  363 ctaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    |||||||||||||||||||| ||||| | || ||| | | |||||||||||||||| || ||||||||||||||||| |||||| || ||||||    
T  24968844 ctaaaccaagcaattcttaggtgtttgt-gatgtacttcattgaaaaatcatgtaattcagcaaagcaagacacctcatgaagaattgggaaga 24968936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 24320603 - 24320529
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattctta 381  Q
    |||||||  |||||||  ||| ||||||||| || |||||||||| ||||||||  |||||||||||||||||||    
T  24320603 gtttaagagacatttttcaatattttcatatcgagtcatgtaattttagtttttccctaaaccaagcaattctta 24320529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 13248446 - 13248495
Alignment:
Q  216 agtcattttagtaatgatttgaatcaataaaaaggagttttagagaagtt 265  Q
    |||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  13248446 agtcattttattattgatttgaaccaataaataggagttttagagaagtt 13248495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 15551046 - 15550973
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttttaact-aaaccaagcaattcttagatgttttt 390  Q
    |||| ||||||||||||||| |  | |||||||||||||||||||  || |||||||||||||||||| |||||||    
T  15551046 acatattgtaatgttttcatttcaaatcatgtaattctagttttt--ctgaaaccaagcaattcttaggtgttttt 15550973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 8323009 - 8323042
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaatt 351  Q
    ||||||||||||||||||||||| ||||||||||    
T  8323009 attttgtaatgttttcatattgagtcatgtaatt 8323042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 11642459 - 11642495
Alignment:
Q  403 ttgaaaaatcatgtaaatcggcaaagcaagacacctc 439  Q
    |||||||||||||||||||||||||| || |||||||    
T  11642459 ttgaaaaatcatgtaaatcggcaaagaaaaacacctc 11642495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 435
Target Start/End: Complemental strand, 21546505 - 21546373
Alignment:
Q  302 tcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattcc 401  Q
    |||| |||||||| ||||||||||||||||||||||  | |||||||||||||||| ||  |||||| ||| || |||||| |||||| | || |||||     
T  21546505 tcatggtttaagggacattttgtaatgttttcatatcaagtcatgtaattctagttcttccctaaactaaggaactcttaggtgttttgt-aaatattct 21546407  T
Q  402 gttgaaaaatcatgtaaatcggcaaagcaagaca 435  Q
     |||||||||||||||| ||||| || |||||||    
T  21546406 cttgaaaaatcatgtaattcggctaatcaagaca 21546373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 433
Target Start/End: Complemental strand, 29555354 - 29555217
Alignment:
Q  296 agttgttcattgtttaaggtacattttgtaatgttttcat-attgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaa 394  Q
    ||||||| || |||||||| |||||||||||||||||  | || || ||||| |||||||||| ||  ||||||||| |||||||||| ||||||| ||     
T  29555354 agttgtttatggtttaagggacattttgtaatgtttttttcatcgagtcatgcaattctagttcttccctaaaccaaccaattcttaggtgttttt-gat 29555256  T
Q  395 gtattccgttgaaaaatcatgtaaatcggcaaagcaaga 433  Q
    | |||   |||||||||||||||| ||||||||||||||    
T  29555255 gaattttattgaaaaatcatgtaattcggcaaagcaaga 29555217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 456
Target Start/End: Complemental strand, 12865200 - 12865061
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatg 415  Q
    |||||||||||||||||||||| || |||||||||||||||| ||  |||||||||  |||| |||| || ||| | | | ||| | |||||||||||||    
T  12865200 acattttgtaatgttttcatatcgagtcatgtaattctagttcttccctaaaccaataaattattaggtg-tttgtaatgaatttcattgaaaaatcatg 12865102  T
Q  416 taaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    ||| |||||||| | ||| ||||| |||||| || ||||||    
T  12865101 taattcggcaaatcgagatacctcatgaagaattgggaaga 12865061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 16799156 - 16799199
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  16799156 acattttgtaatgttttcatttcgaatcatgtaattctagtttt 16799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 8039004 - 8038966
Alignment:
Q  323 gtaatgttttc-atattgattcatgtaattctagttttt 360  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8039004 gtaatgttttctatattgattcatgtaattctagttttt 8038966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 17887827 - 17887880
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagttttt 360  Q
    |||| ||| |||||||||||||||||||| |||| |||||||||| || |||||    
T  17887827 gttttagggacattttgtaatgttttcattttgagtcatgtaattgtacttttt 17887880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 23804354 - 23804303
Alignment:
Q  404 tgaaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    ||||||||||||||| |||||||| ||||| ||||||||||| ||| ||||||    
T  23804354 tgaaaaatcatgtaattcggcaaa-caagatacctcgtgaaggttttggaaga 23804303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 456
Target Start/End: Complemental strand, 20593174 - 20593038
Alignment:
Q  319 ttttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgtaa 418  Q
    ||||||||||||||||||| || |||||||||| || || ||  |||||||||||||||||||| || ||| | ||||||||  ||||| ||||||||||    
T  20593174 ttttgtaatgttttcatatagagtcatgtaattatatttcttccctaaaccaagcaattcttaggtgctttgt-aagtattctattgaacaatcatgtaa 20593076  T
Q  419 atcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
      |||||||| |||| ||||  |||||| |||||||||    
T  20593075 tacggcaaagtaagagaccttatgaagaattaggaaga 20593038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 454
Target Start/End: Original strand, 20102989 - 20103136
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttg- 405  Q
    |||||||| |||||| |||||||||||||||  | |||||||||||||||||||  ||||| |||||||||||||| | |||||| | ||||| | |||     
T  20102989 gtttaagggacatttcgtaatgttttcatatccagtcatgtaattctagttttt-cctaaaacaagcaattcttaggtttttttttatgtatttcattga 20103087  T
Q  406 aaaaatcatgtaaatcggcaaagcaagacacctcgtgaagatttaggaa 454  Q
    |||||||| |||  ||||||||| |||| ||| | |||||| |||||||    
T  20103088 aaaaatcaagtatttcggcaaagtaagataccgcatgaagaattaggaa 20103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 456
Target Start/End: Original strand, 15609015 - 15609153
Alignment:
Q  317 cattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgt 416  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||  |||||| || |||||||||| ||  |||||| ||||| | ||||||||||||||    
T  15609015 cattttgtaatgttttcatattgagtcatgtagttctaattcttccctaaacaaaacaattcttaggtg-attttgatgtatttcattgaaaaatcatgt 15609113  T
Q  417 aaatcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
    || | |  ||||||||||||||  |||||| || ||||||    
T  15609114 aatttgagaaagcaagacaccttatgaagaattgggaaga 15609153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 456
Target Start/End: Complemental strand, 20594088 - 20593953
Alignment:
Q  319 ttttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttgaaaaatcatgtaa 418  Q
    ||||||||||||||||||| || |||||||||| || || ||  ||||||||||||||||||||  ||| ||  ||||||||  ||||| ||||||||||    
T  20594088 ttttgtaatgttttcatatagagtcatgtaattatatttcttccctaaaccaagcaattcttag--gttcttgtaagtattctattgaacaatcatgtaa 20593991  T
Q  419 atcggcaaagcaagacacctcgtgaagatttaggaaga 456  Q
      || ||||| |||| ||||  |||||| |||||||||    
T  20593990 gacgacaaagtaagagaccttatgaagaattaggaaga 20593953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 438
Target Start/End: Complemental strand, 18808362 - 18808220
Alignment:
Q  295 aagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaa 394  Q
    |||||||| || |||||| | | |||||||||| |||||||| ||| | |||||||||||||||||   ||||||||||||| ||  | |||||| || |    
T  18808362 aagttgtttatggtttaaagaaaattttgtaatcttttcatagtgagtaatgtaattctagtttttccttaaaccaagcaatactcgggtgttttgtg-a 18808264  T
Q  395 gtattccgttgaaaaatcatgtaaatcggcaaagcaagacacct 438  Q
    ||||||  |||||| | |||| || ||  |||||||||||||||    
T  18808263 gtattcttttgaaataccatgcaattctacaaagcaagacacct 18808220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 26271203 - 26271123
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttt 388  Q
    ||||||||  ||||||||||||||||||||| || |||||||||| ||  ||||  |||||||||| ||||||||| |||||    
T  26271203 gtttaagggtcattttgtaatgttttcatatcgagtcatgtaattttaactttt-cctaaaccaagaaattcttaggtgttt 26271123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 26456106 - 26456063
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||    
T  26456106 acattttgtaatgttttcatattgagttatgtaattcaagtttt 26456063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 40028800 - 40028759
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagag 260  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  40028800 tcattttagtaatgatttgaatcaat-aaaatgagttttagag 40028759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 15492257 - 15492321
Alignment:
Q  326 atgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgtttttt 391  Q
    |||||||||| |||| |||||||||| ||||||||  | ||||||| || ||||||||||||||||    
T  15492257 atgttttcattttgagtcatgtaattttagtttttt-cgaaaccaaacagttcttagatgtttttt 15492321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 389
Target Start/End: Original strand, 24543801 - 24543895
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgtttt 389  Q
    |||| |||||||| ||||||||  ||||||||||||||||| ||  || |||||||||| ||| | ||   |||| |||||||||||||| ||||||    
T  24543801 agaatttgttcatggtttaagggtcattttgtaatgttttctta--gagtcatgtaattatagctcttccttaaaacaagcaattcttaggtgtttt 24543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 32198710 - 32198614
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgtttt 389  Q
    |||||||||||||  ||||||| || ||||||| |||||| ||| ||| |||||||||||||||| ||  |||||||||||||||||||| ||||||    
T  32198710 agaagttgttcatgttttaagggacgttttgtattgttttaatactgaatcatgtaattctagttcttccctaaaccaagcaattcttaggtgtttt 32198614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 30510814 - 30510771
Alignment:
Q  316 acattttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    |||||||||||||||||||| |||| |||||||||| |||||||    
T  30510814 acattttgtaatgttttcattttgaatcatgtaattttagtttt 30510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 32198751 - 32198699
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaagttgttca 270  Q
    ||||||||||  |||||| | |||||| ||| |||||||||||||||||||||    
T  32198751 tcattttagtggtgatttaagtcaatacaaaagagttttagagaagttgttca 32198699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 440
Target Start/End: Complemental strand, 30699319 - 30699173
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaa-ttcttagatgtttttt 391  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||  | ||||||||||||| || ||  |||| | ||  || ||| ||||||||||||    
T  30699319 agaagttgctcatggtttaaggtacattttgtaatgtttttatatcaaatcatgtaattctatttctttcctaagcaaataaatttcatagatgtttttt 30699220  T
Q  392 gaagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctcg 440  Q
      |||||||  ||||||||| |||||| | | |||| ||||||||||||    
T  30699219 --agtattctattgaaaaattatgtaatttgacaaaccaagacacctcg 30699173  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 439
Target Start/End: Complemental strand, 4451666 - 4451522
Alignment:
Q  293 agaagttgttcattgtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttg 392  Q
    ||||||||||||| |||||| | | ||||| ||||||||| |||| || ||||||||||||| || ||  || || |||| | ||||||  |||||| ||    
T  4451666 agaagttgttcatggtttaaaggatattttataatgtttttatatcgagtcatgtaattctaattcttcccttaatcaagtatttcttatgtgttttgtg 4451567  T
Q  393 aagtattccgttgaaaaatcatgtaaatcggcaaagcaagacacctc 439  Q
     |||||||  ||||||||||||  || ||| |||| |||||||||||    
T  4451566 -agtattctattgaaaaatcatacaattcgacaaa-caagacacctc 4451522  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 3826200 - 3826117
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttt 390  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||||| ||  |||||| ||  ||||||||  |||||||    
T  3826200 gtttaagggacattttgtaatgttttcacaatgagtcatgtaattctagttcttctctaaacaaaataattcttaagtgttttt 3826117  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 446
Target Start/End: Complemental strand, 3863870 - 3863733
Alignment:
Q  307 gtttaaggtacattttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttttttgaagtattccgttga 406  Q
    |||||||| ||||||||||||||||||| ||  | ||||||||||||| || ||  ||| |||||||| |||||||  | ||| ||| || || | |||     
T  3863870 gtttaagggacattttgtaatgttttcacatcaagtcatgtaattctatttcttccctacaccaagcacttcttaggag-tttatgatgtgtttcattg- 3863773  T
Q  407 aaaatcatgtaaatcggcaaagcaagacacctcgtgaaga 446  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  3863772 aaaatcatgtaattcggcaaaacaagatacctcatgaaga 3863733  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 13530097 - 13530063
Alignment:
Q  403 ttgaaaaatcatgtaaatcggcaaagcaagacacc 437  Q
    ||||||||||||||||||||| |||||||||||||    
T  13530097 ttgaaaaatcatgtaaatcggtaaagcaagacacc 13530063  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 13619636 - 13619602
Alignment:
Q  403 ttgaaaaatcatgtaaatcggcaaagcaagacacc 437  Q
    ||||||||||||||||||||| |||||||||||||    
T  13619636 ttgaaaaatcatgtaaatcggtaaagcaagacacc 13619602  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 20268378 - 20268338
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaattctagttt 358  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  20268378 attttgtaatgttttcatttcgagtcatgtaattctagttt 20268338  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 21055007 - 21054967
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaattctagttt 358  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  21055007 attttgtaatgttttcatttcgagtcatgtaattctagttt 21054967  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 6624 - 6554
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaattctagtttttaactaaaccaagcaattcttagatgttt 388  Q
    |||||||||||||||||| | || | ||||||||||| |||||| | |||||| ||| ||||||| |||||    
T  6624 attttgtaatgttttcatttagagtgatgtaattctaatttttatcgaaaccatgcagttcttaggtgttt 6554  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 16924 - 16883
Alignment:
Q  318 attttgtaatgttttcatattgattcatgtaattctagtttt 359  Q
    |||||||||||||||||| | |||||||||||||||| ||||    
T  16924 attttgtaatgttttcatttcgattcatgtaattctaatttt 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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