View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4250_high_4 (Length: 391)
Name: NF4250_high_4
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4250_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 52495792 - 52496153
Alignment:
| Q |
19 |
gtttcgaacataaaaattgaattaattaagaattaaaaccgtacctagtaagatgaatcaccgatctcgttttaataaaatttaactattggtacataat |
118 |
Q |
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| T |
52495792 |
gtttcgaacataaaaattgaattaattaagaattaaaaccgcacctagtaagatgaatcaccgatctcgttttaataaaatttaactattggtacataat |
52495891 |
T |
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| Q |
119 |
aataagaatggatagtgttgaagttgaaatagagaaaattaagatctgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttct |
218 |
Q |
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| T |
52495892 |
aataagaatggatagtgttgaagttgaaatagagaaaattaagatctgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttct |
52495991 |
T |
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| Q |
219 |
ttgtttgtgtaaagctaactaaaataataaatagaacgaactagaagtgttatcaaagatannnnnnnaaagtttaggaaagtatcaaccgttcttccac |
318 |
Q |
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| T |
52495992 |
ttgtttgtgtaaagctaact-aaataataaatagaacgaactagaagtgttatcaaagatatttttttaaagtttaggaaagtatcaaccgttcttccac |
52496090 |
T |
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| Q |
319 |
cgcaagcatcatcttcaattagatagatagaccataaaatgaaatcactcttttacccctatg |
381 |
Q |
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| T |
52496091 |
cgcaagcatcatcttcaattagatagatagaccataaaatgaaatcactcttttacccctatg |
52496153 |
T |
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