View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4250_high_6 (Length: 294)
Name: NF4250_high_6
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4250_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 1760145 - 1759887
Alignment:
| Q |
23 |
aaaccaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgnnnnnnnncctcctcctatggttccagaacttc |
122 |
Q |
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| T |
1760145 |
aaaccaggcatgacaccacaagatccattttcattttcattgtcaccaccaccatcaacaccaggcgttttgtttcctcctcctatggttccagaacttc |
1760046 |
T |
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| Q |
123 |
cacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaa |
222 |
Q |
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| T |
1760045 |
cacaacaacccccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaa |
1759946 |
T |
|
| Q |
223 |
cccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1759945 |
cccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttct |
1759887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 1759979 - 1759818
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
219 |
Q |
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||||| || |||||||||||||| ||| |||||| ||||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1759979 |
ttccaaaagaaccaccatctttctccatgccaaacccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttctccatgcc |
1759880 |
T |
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| Q |
220 |
aaacccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttct |
281 |
Q |
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| T |
1759879 |
aaacccaacacctgatagttctcttcctcctccagagattccacaagaaccaccaactttct |
1759818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 1759910 - 1759749
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
219 |
Q |
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|||||||| |||||||||||||| ||| |||||| |||||||| |||| ||| | | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
1759910 |
ttccacaagaaccaccatctttctccatgccaaacccaacacctgatagttctcttcctcctccagagattccacaagaaccaccaactttctccatgcc |
1759811 |
T |
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| Q |
220 |
aaacccaacaccatataattctcttcctcctccagagattccacaagaaccaccatctttct |
281 |
Q |
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||||||||||||| ||| || |||| |||| |||||||||||||||||||||||| |||||| |
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| T |
1759810 |
aaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactttct |
1759749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 273
Target Start/End: Complemental strand, 1759841 - 1759688
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
219 |
Q |
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|
|||||||| |||||||| ||||| ||| |||||| ||||||||||||| || | |||||| |||||||||||| ||||||||||| |||||| |||||| |
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| T |
1759841 |
ttccacaagaaccaccaactttctccatgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactttctacatgcc |
1759742 |
T |
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| Q |
220 |
aaacccaacaccatataattctcttcctcctccagagattccacaagaaccacc |
273 |
Q |
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||||||||| ||| ||| || |||| |||| ||||||||||||||||||||||| |
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| T |
1759741 |
aaacccaaccccagatatttttctttctccaccagagattccacaagaaccacc |
1759688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 1759634 - 1759480
Alignment:
| Q |
120 |
ttccacaacaaccaccatctttcaccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgcc |
219 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||||| |||| || | ||||||||| ||||||||| | ||||||||| |||| ||||||| |
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| T |
1759634 |
ttccacaagaaccaccaactatcgccacgccaaatccaacacctgatatttttctttctcctcctgagattccacaggaaccaccaattttcgccatgcc |
1759535 |
T |
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| Q |
220 |
aaacccaacaccatataattctcttcctcctccagagattccacaagaaccacca |
274 |
Q |
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||| ||||||||| ||| || |||| ||||||| ||||||||||||||||||||| |
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| T |
1759534 |
aaatccaacaccagatatttttctttctcctcctgagattccacaagaaccacca |
1759480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 1759679 - 1759549
Alignment:
| Q |
144 |
ccacgccaaatccaacaccagataattcgccttctcctccagagattccaaaagaaccaccatctttctccatgccaaacccaacaccatataattctct |
243 |
Q |
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|||||||||| ||||||||||||| || | |||||| |||||||||||| ||||||||||| || || ||| |||||| |||||||| ||| || ||| |
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| T |
1759679 |
ccacgccaaacccaacaccagatatttttctttctccaccagagattccacaagaaccaccaactatcgccacgccaaatccaacacctgatatttttct |
1759580 |
T |
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| Q |
244 |
tcctcctccagagattccacaagaaccacca |
274 |
Q |
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| T |
1759579 |
ttctcctcctgagattccacaggaaccacca |
1759549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 1760172 - 1760137
Alignment:
| Q |
53 |
tcattttcattgtcaccaccaccatcaacaccaggc |
88 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
1760172 |
tcattttcattgtcaccaccaccatcaaaaccaggc |
1760137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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