View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4250_high_9 (Length: 240)
Name: NF4250_high_9
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4250_high_9 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 42575076 - 42574872
Alignment:
| Q |
1 |
tagatggtaaaaggtcttggtaatgtagagtaaattttgatacaaaattattttaattgggcttaaaaaagaaaagttaaacacgtatatagagtcacgt |
100 |
Q |
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| T |
42575076 |
tagatggtaaaaggtcttggtaatgtagagtaaattttgatacaaaattattttaattgggcttaaaaaagaaaagttaaacacgtatacagagtcacgt |
42574977 |
T |
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| Q |
101 |
aatcactaaatatgtggtcgctattcaatttacaaaagccaaattaaccaattgtttgattatgaaattcatgagcacgttagttttttgtagagtgaat |
200 |
Q |
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| T |
42574976 |
aatcactaaatatgtggtcgctattcaatttacaaaagccaaattaaccaattgtttgattatgaaattcatgagcacgttagttttttgtagagtgaat |
42574877 |
T |
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| Q |
201 |
ttcaa |
205 |
Q |
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||||| |
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| T |
42574876 |
ttcaa |
42574872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 515 - 652
Alignment:
| Q |
68 |
aaagaaaagttaaacacgtatatagagtcacgtaatcactaaatatgtggtcgctattcaatttacaaaagccaaattaaccaattgtttgattatgaaa |
167 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
515 |
aaagaagagttaaacacgtatatagagtcacgtaatcactaaatatgtggtcgctattcaatttacaaaagccaaattaaccaattgtttgattatcaaa |
614 |
T |
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| Q |
168 |
ttcatgagcacgttagttttttgtagagtgaatttcaa |
205 |
Q |
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| T |
615 |
ttcatgagcacgttagttttttgtagagtgaatttcaa |
652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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