View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4250_low_4 (Length: 398)

Name: NF4250_low_4
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4250_low_4
NF4250_low_4
[»] scaffold0011 (3 HSPs)
scaffold0011 (38-342)||(217329-217634)
scaffold0011 (78-337)||(189679-189942)
scaffold0011 (38-86)||(189280-189328)
[»] chr4 (4 HSPs)
chr4 (1-42)||(5874246-5874287)
chr4 (1-39)||(21802753-21802791)
chr4 (5-39)||(34738050-34738084)
chr4 (5-33)||(43942118-43942146)
[»] chr7 (2 HSPs)
chr7 (1-39)||(14755767-14755805)
chr7 (228-257)||(35874118-35874147)
[»] chr6 (1 HSPs)
chr6 (1-39)||(18882289-18882327)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-39)||(50590-50628)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-39)||(148006-148044)
[»] chr3 (4 HSPs)
chr3 (5-39)||(346592-346626)
chr3 (5-39)||(10179414-10179448)
chr3 (5-39)||(34209855-34209889)
chr3 (205-250)||(43383510-43383557)
[»] chr1 (2 HSPs)
chr1 (1-39)||(39623057-39623095)
chr1 (9-39)||(42332478-42332508)
[»] chr8 (1 HSPs)
chr8 (6-39)||(44212153-44212186)
[»] scaffold1521 (1 HSPs)
scaffold1521 (4-40)||(108-144)
[»] scaffold0152 (2 HSPs)
scaffold0152 (4-40)||(30575-30611)
scaffold0152 (4-40)||(31366-31402)
[»] chr2 (1 HSPs)
chr2 (1-32)||(40652805-40652836)
[»] scaffold0316 (1 HSPs)
scaffold0316 (5-33)||(5435-5463)


Alignment Details
Target: scaffold0011 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 38 - 342
Target Start/End: Original strand, 217329 - 217634
Alignment:
Q  38 attcttcttattttattgttttaaaggggcctatatgttattttttatacgcccattggtgtgttgttgttgatttacccgtcgtgaaaaggggtagttg 137  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||    
T  217329 attcttcttattttattgttataaaggggcctatatgttattttttatacgaccattggtgtgttgttgttgatttccccgtcgtgaaaaggggtagctg 217428  T
Q  138 aaatgaattttaatgcaccatc-gtcattaatataggaatattttgtaaaaattacggatgtccgataaataaatttgtctaaaagatgtaactattact 236  Q
    |||||||||||||| ||||||| | |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  217429 aaatgaattttaatacaccatcagacattaatataggagaattttgtaaaaattacggatgtccgatgaataaatttgtctaaaagatgtaactattact 217528  T
Q  237 aaattatcatttatatataaactcattcaaggataatttttcatattatcctcttcccgtcttaaaataaatgacattgttgactgttacacacaagcca 336  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  217529 aaattgtcatttatatataaactcattcaaggataatttttcatattatcctctccccgtcctaaaataaatgacattgttgactgttacacacaagcca 217628  T
Q  337 acacac 342  Q
    ||||||    
T  217629 acacac 217634  T

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Target: scaffold0011; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 78 - 337
Target Start/End: Original strand, 189679 - 189942
Alignment:
Q  78 ttttttatacgcccattggtgtgttgttgttgatttacccgtcgtgaaaaggggtagttgaaatgaattttaatgcaccatcg-tcattaatataggaat 176  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||  || |||||||||||||||| |||||||| || ||||||||||| |    
T  189679 ttttttatacgcccattggtgtgttgttgttgatttccccatcgtgaaaagggc-agctgaaatgaattttaatacaccatcggtccttaatataggagt 189777  T
Q  177 attttgtaaaaattacggatgtccgataaataaat----ttgtctaaaagatgtaactattactaaattatcatttatatataaactcattcaaggataa 272  Q
    |||||||||||||||| |||||| ||| |||||||    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  189778 attttgtaaaaattacagatgtcagatgaataaatataattgtctaaaagatgtaactattactaaattgtcgtttatatataaactcattcaaggataa 189877  T
Q  273 tttttcatattatcctcttcccgtcttaaaataaatgacattgttgactgttacacacaagccaa 337  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||    
T  189878 tttttcatattatcctctctccgtcctaaaataaatgatattgttgactgttacacacaagccaa 189942  T

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Target: scaffold0011; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 189280 - 189328
Alignment:
Q  38 attcttcttattttattgttttaaaggggcctatatgttattttttata 86  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  189280 attcttcttattttattgttttaaaggggcatatatgttatttattata 189328  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5874287 - 5874246
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagattct 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5874287 tagcttagaatacatgtatatagagatagagatagagattct 5874246  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21802791 - 21802753
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21802791 tagcttagaatacatgtatatagagatagagatagagat 21802753  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 34738050 - 34738084
Alignment:
Q  5 ttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||    
T  34738050 ttagaatacatgtatatagagatagagatagagat 34738084  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 43942146 - 43942118
Alignment:
Q  5 ttagaatacatgtatatagagatagagat 33  Q
    |||||||||||||||||||||||||||||    
T  43942146 ttagaatacatgtatatagagatagagat 43942118  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14755805 - 14755767
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14755805 tagcttagaatacatgtatatagagatagagatagagat 14755767  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 35874147 - 35874118
Alignment:
Q  228 actattactaaattatcatttatatataaa 257  Q
    ||||||||||||||||||||||||||||||    
T  35874147 actattactaaattatcatttatatataaa 35874118  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18882327 - 18882289
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18882327 tagcttagaatacatgtatatagagatagagatagagat 18882289  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50628 - 50590
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  50628 tagcttagaatacatgtatatagagatagggatagagat 50590  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 148006 - 148044
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  148006 tagcttagaatacatgtatatagagatagggatagagat 148044  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 346626 - 346592
Alignment:
Q  5 ttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||    
T  346626 ttagaatacatgtatatagagatagagatagagat 346592  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 10179414 - 10179448
Alignment:
Q  5 ttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||    
T  10179414 ttagaatacatgtatatagagatagagatagagat 10179448  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 34209889 - 34209855
Alignment:
Q  5 ttagaatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||||||    
T  34209889 ttagaatacatgtatatagagatagagatagagat 34209855  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 43383557 - 43383510
Alignment:
Q  205 aataaatttgtctaaaagatgta--actattactaaattatcatttat 250  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  43383557 aataaatatgtctaaaatatgtatgactattactaaattatcatttat 43383510  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39623095 - 39623057
Alignment:
Q  1 tagcttagaatacatgtatatagagatagagatagagat 39  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39623095 tagcttaaaatacatgtatatagagatagagatagagat 39623057  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 42332508 - 42332478
Alignment:
Q  9 aatacatgtatatagagatagagatagagat 39  Q
    |||||||||||||||||||||||||||||||    
T  42332508 aatacatgtatatagagatagagatagagat 42332478  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 44212186 - 44212153
Alignment:
Q  6 tagaatacatgtatatagagatagagatagagat 39  Q
    ||||||||||||||||||||||||||||||||||    
T  44212186 tagaatacatgtatatagagatagagatagagat 44212153  T

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Target: scaffold1521 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1521
Description:

Target: scaffold1521; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 144 - 108
Alignment:
Q  4 cttagaatacatgtatatagagatagagatagagatt 40  Q
    ||||||||||||||| |||||||||||||||||||||    
T  144 cttagaatacatgtagatagagatagagatagagatt 108  T

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Target: scaffold0152 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 30575 - 30611
Alignment:
Q  4 cttagaatacatgtatatagagatagagatagagatt 40  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30575 cttagaatacatgtagatagagatagagatagagatt 30611  T

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Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 31366 - 31402
Alignment:
Q  4 cttagaatacatgtatatagagatagagatagagatt 40  Q
    ||||||||||||||| |||||||||||||||||||||    
T  31366 cttagaatacatgtagatagagatagagatagagatt 31402  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40652805 - 40652836
Alignment:
Q  1 tagcttagaatacatgtatatagagatagaga 32  Q
    ||||||||||||||||||||||||||||||||    
T  40652805 tagcttagaatacatgtatatagagatagaga 40652836  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 5435 - 5463
Alignment:
Q  5 ttagaatacatgtatatagagatagagat 33  Q
    |||||||||||||||||||||||||||||    
T  5435 ttagaatacatgtatatagagatagagat 5463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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