View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4250_low_6 (Length: 385)
Name: NF4250_low_6
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4250_low_6 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 51772483 - 51772129
Alignment:
| Q |
22 |
agaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttct |
121 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772483 |
agaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaataccgcataaacactttct |
51772384 |
T |
|
| Q |
122 |
ccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattata |
221 |
Q |
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| T |
51772383 |
ccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattata |
51772284 |
T |
|
| Q |
222 |
tataataggattagaaacgatcgagtaaatgactatatgaggagttcataaactgatatagatattgcagacaaaaggcatggacttcataaactatata |
321 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772283 |
tataataggattagaaacgatcgagtaaatgactatacgaggagttcataaactgatatagatattgcagacaaaaggcatggacttcataaactatata |
51772184 |
T |
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| Q |
322 |
tgcaataacaattggaaacacatctcagtcttacaagggtactcaccatattctt |
376 |
Q |
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| T |
51772183 |
tgcaataacaattggaaacacatctcagtcttacaagggtactcaccatgttctt |
51772129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 51808058 - 51807869
Alignment:
| Q |
22 |
agaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttct |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||| | || ||||| | || ||||||||||||| || |||||||||||| |
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| T |
51808058 |
agaccagctagaggaccagatgtggtggatagataacactgtgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacactttct |
51807959 |
T |
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| Q |
122 |
ccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaattt |
211 |
Q |
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| T |
51807958 |
ccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttagatatgtttgctccaactctcactgaaattt |
51807869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 51780336 - 51780133
Alignment:
| Q |
25 |
ccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttctcca |
124 |
Q |
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||||||||||| |||||||||||||| |||||||| || |||| |||||||| ||| |||||||||||||| ||||||| | ||| |||| |
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| T |
51780336 |
ccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca----------ctctctcacactaaaatagtgcataaaaaatttatcca |
51780247 |
T |
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| Q |
125 |
ctccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattatatat |
224 |
Q |
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| T |
51780246 |
ctccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgctcccagtcttaatgaaatttcagaattatataa |
51780147 |
T |
|
| Q |
225 |
aataggattagaaa |
238 |
Q |
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|||||||||||||| |
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| T |
51780146 |
aataggattagaaa |
51780133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 51804105 - 51803934
Alignment:
| Q |
22 |
agaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttct |
121 |
Q |
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||||||| ||||||||| ||||||||||| |||||||||||||||| ||| | || ||||| | || ||||||||||||||| || |||||| ||||| |
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| T |
51804105 |
agaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcctaaacattttct |
51804006 |
T |
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| Q |
122 |
ccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctc |
193 |
Q |
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| T |
51804005 |
ccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttgctc |
51803934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 51761472 - 51761423
Alignment:
| Q |
34 |
ggaccagatgtggtggatagataacactgcgaaattttcaacagactctc |
83 |
Q |
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| T |
51761472 |
ggaccagatgtggtggacagataacagtgtgaaactttcaacagcctctc |
51761423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 51807751 - 51807718
Alignment:
| Q |
335 |
ggaaacacatctcagtcttacaagggtactcacc |
368 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
51807751 |
ggaaacacatctaagtcttacaagggtactcacc |
51807718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 6922 - 6775
Alignment:
| Q |
91 |
ctcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttg |
190 |
Q |
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|||||||||||||| ||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | ||||||||||||||||||| |
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| T |
6922 |
ctcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttg |
6823 |
T |
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| Q |
191 |
ctctaagtcttactgaaatttaagaattatatataataggattagaaa |
238 |
Q |
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| T |
6822 |
ctcccagtcttaatgaaatttcagaattatataaaataggattagaaa |
6775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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