View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4250_low_9 (Length: 337)
Name: NF4250_low_9
Description: NF4250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4250_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2830305 - 2829969
Alignment:
| Q |
1 |
tgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaaa |
100 |
Q |
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| T |
2830305 |
tgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaaa |
2830206 |
T |
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| Q |
101 |
caacacacatattttagataatttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgtg |
200 |
Q |
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| T |
2830205 |
caacacacatattttagataatttcttatgcattagaagaaagaaaggtaaagagcataaagaacaaatattgatattttacctggacaatcagttcgtg |
2830106 |
T |
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| Q |
201 |
gactgcttaaagttagaagtccctcaaatgttccagcccatgcatccctctttgtcagaaattcagggagattgaatatcttcttcacagttgctggtat |
300 |
Q |
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| T |
2830105 |
gactgcttaaagttagaagtccctcaaatgttccagcccatgcatccctctttgtcagaaattcagggagattgaatatcttcttcacagttgctggtat |
2830006 |
T |
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| Q |
301 |
agatgaatgctcatactgtgatgttggaaatggtcca |
337 |
Q |
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| T |
2830005 |
agatgaatgctcatactgtgatgttggaaatggtcca |
2829969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2789051 - 2788715
Alignment:
| Q |
1 |
tgatcgacattattcaacactctaaagtaagttgttaactttagaggagtctgattcaacatgaatttaggcaacattctttattctaagctcatcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
2789051 |
tgatcgacattattcaacactctaaagtaagttgtttactttagaggagtctgatccaacattaatttagggaacattctttatcctaagctcatcaaaa |
2788952 |
T |
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| Q |
101 |
caacacacatattttagataatttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgtg |
200 |
Q |
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|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788951 |
caacacacatatttaatataacttcttatgcattagaagaaagaaaggtgaagagcataaagaacaaatattgatattttacctggacaatcagttcgtg |
2788852 |
T |
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| Q |
201 |
gactgcttaaagttagaagtccctcaaatgttccagcccatgcatccctctttgtcagaaattcagggagattgaatatcttcttcacagttgctggtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2788851 |
gactgcttaaagttagaagtccctcaaatgttccagcccatgcatccctctttgtcagaaattcagggagattgaatatcttcttcacagttgcaggtat |
2788752 |
T |
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| Q |
301 |
agatgaatgctcatactgtgatgttggaaatggtcca |
337 |
Q |
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| T |
2788751 |
agatgaatgctcatattgtgaagttggaaatggtcca |
2788715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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