View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4251_high_1 (Length: 523)
Name: NF4251_high_1
Description: NF4251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4251_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Original strand, 17779190 - 17779692
Alignment:
| Q |
17 |
agatgttaccccttataaatccattattagtccattactacatgaagatcttaatacaaacttgatattctcatcatcatctccacttgaaacatctaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779190 |
agatgttaccccttataaatccattattagtccattactacatgaagatcttaatacaagcttgatattctcatcatcatctccacttgaaacatctaac |
17779289 |
T |
|
| Q |
117 |
actaatagtgatattattaccaaatctacaatggatgtttcatcaatgttgttgaatatgtcatcatcatcctcaatgcttggtgactttagcaagacat |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779290 |
actaatagtgatattatttccaaatctacaatggatgtttcatcaatgttgttgaatatgtcatcatcatcctcaatgcttggtgactttagcaagacat |
17779389 |
T |
|
| Q |
217 |
gtgatgaggttacaactacaaatttcatgaatggtgggttgcaagagcaatttagtgactactcattaccatttggtaattaccaatatgataataatgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779390 |
gtgatgaggttacaactacaaatttcatgaatggtgggttgcaagagcaatttagtgactactcattaccatttggtaattaccaatatgataataatgc |
17779489 |
T |
|
| Q |
317 |
attggttaaggtaccttataatgttaatgtgaatgtgcctcgtattgatgaacaagaattgatgaatttcaatattggtgatgcatggaagtcaaatttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779490 |
attggttaaggtaccttataatgttaatatgaatgtgcctcgtattgatgaacaagaattgatgaatttcaatattggtgatgcatggaagtcaaatttg |
17779589 |
T |
|
| Q |
417 |
ctttgggatacttcattttgtcctattgatgttccctctagttattcaataaccaagtgttacacttaatttgtaccttttatttttacataagtataat |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17779590 |
ctttgggatacttcattttgtcctattgatgttccctctagttattcaacaaccaagtgttacacttaatttgtaccttttatttttacataagtagaat |
17779689 |
T |
|
| Q |
517 |
cta |
519 |
Q |
| |
|
||| |
|
|
| T |
17779690 |
cta |
17779692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University