View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4251_high_5 (Length: 247)
Name: NF4251_high_5
Description: NF4251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4251_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 8040900 - 8040697
Alignment:
| Q |
6 |
aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040900 |
aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaataaaagagaaggatcgataaacttatatgtccttaataattttat |
8040801 |
T |
|
| Q |
106 |
atggctagagtactgacataactctgtcaatatcttcaccaacaacttatatgtaacttgcaaaataataaacgtgacaaagtcattgttcttaaagatt |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8040800 |
atagctagagtactgacataactctgtcaatatcttcaccaacaacttatatgtaacttgcaaaataataaacgtgacaaagtcattgttcttaaagatc |
8040701 |
T |
|
| Q |
206 |
tata |
209 |
Q |
| |
|
|||| |
|
|
| T |
8040700 |
tata |
8040697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 21501064 - 21501238
Alignment:
| Q |
4 |
gtaaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataatttt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
21501064 |
gtaaattattctcaaataaaaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaacttatatgttcttaataatttt |
21501163 |
T |
|
| Q |
104 |
agatggctagagtactgacataactctgtcaatat-cttcaccaacaacttatatgtaacttgcaaaataataaa |
177 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
21501164 |
agatagctagagtactgacataactctgtcaatgtccttcaccaacaactcatatgtaacctgcaaaataataaa |
21501238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 26444910 - 26445084
Alignment:
| Q |
6 |
aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
26444910 |
aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatctgtccttactaattttag |
26445009 |
T |
|
| Q |
106 |
atggctagagtactgacataactctgtcaatat-cttcaccaacaacttatatgtaacttgcaaaataataaacg |
179 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
26445010 |
atagctagagtactgacataactctatcaatatccttcaccaacaactcatatgtaacctgcaaaataataaacg |
26445084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 2353360 - 2353324
Alignment:
| Q |
142 |
caccaacaacttatatgtaacttgcaaaataataaac |
178 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2353360 |
caccaacaactcatatgtaacctgcaaaataataaac |
2353324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 65987 - 66159
Alignment:
| Q |
6 |
aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtccttaataattttag |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||| |||||| | || |||||| | ||||||||| |||||| |
|
|
| T |
65987 |
aaattattctcaaataaaaattaatatatgcatatatacatcaattgaatataagcaaaagagaaggatggttacacttatgtatccttaatatttttag |
66086 |
T |
|
| Q |
106 |
atggctagagtactgacataactctgtcaatatc-ttcaccaacaacttatatgtaacttgcaaaataataaa |
177 |
Q |
| |
|
|| ||||| || || ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
66087 |
atagctagggtgctaacataactctgtcaatatctttcaccaacaactcatatgtaacttataaaataataaa |
66159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27082917 - 27082991
Alignment:
| Q |
18 |
aataaaaattaacatatacatataaacatcaattgaatataaacaaaagataaggatcgataaacttatatgtcc |
92 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||||| ||||||| | |||| |||||||||| ||||| |
|
|
| T |
27082917 |
aataataattaacatatacatatgaacatcaattaaatataagcaaaagagatagatcaataaacttatctgtcc |
27082991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University