View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4251_low_1 (Length: 976)
Name: NF4251_low_1
Description: NF4251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4251_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 535 - 958
Target Start/End: Complemental strand, 19530423 - 19530000
Alignment:
| Q |
535 |
agagtgcacatgtttttgaactagtgccagagtttgccaaatttatagttgggtgatagtagaggttagtcccatgtacacttaagccttgtttggataa |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19530423 |
agagtgcacatgtttttgaactagtgccagagtttgccaaatttatagttgggtgatagtagaggttagtcccatgtacacttaagccttgtttggataa |
19530324 |
T |
|
| Q |
635 |
acaacttgattaagcgcttatcatgttaagtctttataaataggctatttatgtaataaaagataaaataaagcacactgtttttgtgtgagaaataggc |
734 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19530323 |
acaaattgattaagcgcttatcatgttaagtctttataaataggctatttatgtaataaaagataaaataaagcacactgtttttgtgtgagaaataaac |
19530224 |
T |
|
| Q |
735 |
tgttttcataagttattttggatggcttatggaaataagatctcccaagcaatcatagacagtttcctaggtatttatgtcagtagataagcacaattaa |
834 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19530223 |
tgttttcataagttattttggatggcttatggaaataagatctcccaagcaatcatagacagtttcctaggtatttatgtcagtagataagcacaattaa |
19530124 |
T |
|
| Q |
835 |
gcctatcctaacaggctcttaataataaaatgtttttaaaccctgctggccatgcttctgtgtcatgtctggttgttagcttagttatctttatgaaatt |
934 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19530123 |
gcctatcctaacagtctcttaataataaaatgtttttaaaccctgctggccatgcttctgtgtcatgtctggttgttagcttagttatctttatgaaatt |
19530024 |
T |
|
| Q |
935 |
tgtaaatttgaagtctgtgtgatg |
958 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
19530023 |
tgtaaatttgaagtctgtgtgatg |
19530000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 19530937 - 19530533
Alignment:
| Q |
19 |
aaacaattgaatgttgttaggtctgatgaagtcaatgctgttgattttggcgggaaattgaggcgaaacgatgaagaggcggatgaattggtgaagaata |
118 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
19530937 |
aaacaattgaattttgataggtctgatgaaatcaatgctgttgattttggcgggaaattgaggcgaaacgatgaagaggcagatgaattggtgaagaata |
19530838 |
T |
|
| Q |
119 |
tagtgaatgtgtctggagaagagaaagtgtatagtgttgtggtggtgaatggggaggaagaggtgaaggctgtggttgggaagtataggcatggatggat |
218 |
Q |
| |
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| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
19530837 |
tggtgaatgtgtatggagaagagaaggtgtatagtgttgtggtggtgaatggggaggatgaggtgaaagctgtgattgggaagtataggcatgggtggat |
19530738 |
T |
|
| Q |
219 |
tgttgggaaggtttcggaggaggaagtgattttgcgtgtggcggagatttttggtaaggtgtttgtgaatggtgggagtgaagatggttcgattcggagt |
318 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
19530737 |
tgttgggaaggttttggaggaggaagcagttttgcgtgtggcggagatttttggtaaggtgtttgtgaatggtgggagtgaagatggtttgattcggagt |
19530638 |
T |
|
| Q |
319 |
gagtttatgcctgttggttctgatgggaggattgttctttcttttagtttgcttaatgctgacccaagggattgggtttatgattggtacgaatggattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19530637 |
gagtttatgcctgttggttctgatgggaggatcgttctttcttttagtttgcttaatgctgacccaagggattgggtttatgattggtatgaatggattt |
19530538 |
T |
|
| Q |
419 |
tgaaa |
423 |
Q |
| |
|
||||| |
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|
| T |
19530537 |
tgaaa |
19530533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 655
Target Start/End: Complemental strand, 12835126 - 12835095
Alignment:
| Q |
624 |
tgtttggataaacaacttgattaagcgcttat |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
12835126 |
tgtttggataaacaacttgattaagcgcttat |
12835095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 624 - 658
Target Start/End: Original strand, 48496600 - 48496634
Alignment:
| Q |
624 |
tgtttggataaacaacttgattaagcgcttatcat |
658 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
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|
| T |
48496600 |
tgtttggataaacaacttgattaagcacttatcat |
48496634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 655
Target Start/End: Complemental strand, 39257579 - 39257544
Alignment:
| Q |
620 |
gccttgtttggataaacaacttgattaagcgcttat |
655 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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|
| T |
39257579 |
gccttgtttggataaacaacttaattaagcgcttat |
39257544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 654
Target Start/End: Original strand, 18852894 - 18852927
Alignment:
| Q |
621 |
ccttgtttggataaacaacttgattaagcgctta |
654 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
18852894 |
ccttgtttggataaacaacttaattaagcgctta |
18852927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 622 - 656
Target Start/End: Complemental strand, 37342918 - 37342884
Alignment:
| Q |
622 |
cttgtttggataaacaacttgattaagcgcttatc |
656 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
37342918 |
cttgtttggataaacaacttcattaagcgcttatc |
37342884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 624 - 658
Target Start/End: Complemental strand, 41638484 - 41638450
Alignment:
| Q |
624 |
tgtttggataaacaacttgattaagcgcttatcat |
658 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
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|
| T |
41638484 |
tgtttggataaacaacttgattaagcacttatcat |
41638450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 655
Target Start/End: Original strand, 16322713 - 16322754
Alignment:
| Q |
614 |
acttaagccttgtttggataaacaacttgattaagcgcttat |
655 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||| |
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|
| T |
16322713 |
acttaagtcttgtttggataaacaacttaattaagtgcttat |
16322754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 674 - 707
Target Start/End: Original strand, 21653026 - 21653059
Alignment:
| Q |
674 |
ataggctatttatgtaataaaagataaaataaag |
707 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
21653026 |
ataggctatttatgtaacaaaagataaaataaag |
21653059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 622 - 655
Target Start/End: Original strand, 5942804 - 5942837
Alignment:
| Q |
622 |
cttgtttggataaacaacttgattaagcgcttat |
655 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
5942804 |
cttgtttggataaacaacttaattaagcgcttat |
5942837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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